v0.0.3

Commits

• 792bed9: establish develop branch (Candace Moore) #214
• 74ac458: question develop (Candace Moore) #214
• 7f87cfa: add pytest based run (Candace Moore) #214
• 11c6550: get libraries (Candace Moore) #214
• b29e659: question lin t pycodestyle (Candace Moore) #214
• ea52ce4: fix ci (Candace Moore) #214
• 69352b7: changing ci to install pytest (Candace Moore) #214
• bedc26f: install in ci setup (Candace Moore) #214
• 3214f8e: try nbmake ci in container (Candace Moore) #214
• b8cd1bd: miassing tick (Candace Moore) #214
• 9517c29: fixing relevant openwork notebooks (Candace Moore) #214
• fdb5ef1: pull nbmake from ci (Candace Moore) #214
• d7b98bd: try only one nb folder (Candace Moore) #214
• 31d9ec4: new enviro (Candace Moore) #214
• e61da81: remove ci nbmake due to lack of data (Candace Moore) #214
• 16524b9: fix bug, typos (Candace Moore) #214
• 798db0e: update documentation (Candace Moore) #214
• 0410784: clean sabre (Candace Moore) #214
• 3dca5e3: add autocombat1,1d (Candace Moore) #214
• 03f5b26: final autocombat on all (Candace Moore) #214
• a733179: add 2 level autocombat experiments (Candace Moore) #214
• 3e560fb: 3d autoharm (Candace Moore) #214
• 77e31f3: seperate and explain testing environments (Candace Moore) #214
• 1b6bdef: add option for fine grained autocombat split to all experi (Candace Moore) #214
• 6b31728: start neuroHarmony (Candace Moore) #214
• d362095: change env, add sabre versus neuroharm (Candace Moore) #214
• 6608814: finish all neurharmonized file makeing (Candace Moore) #214
• f0dcec8: experiment 1e (Candace Moore) #214
• 6c8d6dc: better named, add neuroharm to 2 exp (Candace Moore) #214
• 9336dc6: add exp 3e (Candace Moore) #214
• 5a78b4f: start covbat (Candace Moore) #214
• 702b6ad: starting covbat 2 (Candace Moore) #214
• 9ee405c: example of better shuffle split (Candace Moore) #214
• 18ebb81: #160 changed neuroharmony to neuroHarmonize (mdijsselhof) #214
• ed37d59: #156 changed the previous k-fold to double-stratified (mdijsselhof) #214
• 84c66db: revert legacy and other old notebooks (Candace Moore) #214
• 58d3549: open branch to do seperate extended sets and add covbat (Candace Moore) #214
• 91d3c34: try to fix medical professionals doc (Candace Moore) #214
• c0e4dd3: data check for extended (Candace Moore) #214
• 89d549b: start on 1a (Candace Moore) #214
• fea0dc1: unharmoinzed as (Candace Moore) #214
• 2527f93: fix 3a, add harmonizations folder (Candace Moore) #214
• 5053023: fixing harmonization for new top and mri extended (Candace Moore) #214
• a6097ef: extended experiment 1b (Candace Moore) #214
• 0a9fdc0: extended topmri vs sabre (Candace Moore) #214
• fdc9fdf: add insight extended neurocombat harm (Candace Moore) #214
• d211260: neurocombat edis (Candace Moore) #214
• 48ac17e: add ml_experiment2bc edis (Candace Moore) #214
• ccc6d30: open nested for extended (Candace Moore) #214
• 0b8646d: add open nest sabre , update harmony (Candace Moore) #214
• 123026a: more open nested vs sets (Candace Moore) #214
• 988cbe4: fixing environment and INI sex problem (Candace Moore) #214
• 88f3025: try workflow with nC (Candace Moore) #214
• 2a5816a: isolate opennest requirements (Candace Moore) #214
• ebc4838: clean extended (Candace Moore) #214
• f907c52: more cleaning (Candace Moore) #214
• 7fd8eab: spce in harmony (Candace Moore) #214
• d572846: reorg to vendor (Candace Moore) #214
• 5cf12a3: add more to vendor (Candace Moore) #214
• 5e5e1ba: sphinx lint neurcombat (Candace Moore) #214
• fd18896: another sphinx lint (Candace Moore) #214
• 9b1bb99: sphinx lint neurcombat again (Candace Moore) #214
• 94600e8: sphinx lint neurcombat again2 (Candace Moore) #214
• f8cd395: finalfix sphinx (Candace Moore) #214
• 27a5a72: sphinx fix opennested (Candace Moore) #214
• ef8bc23: finish reorg (Candace Moore) #214
• 87d3a50: add covbat folder (Candace Moore) #214
• 8580417: autocombat start (Candace Moore) #214
• 4b25900: do not lint vendor (Candace Moore) #214
• 98627fa: more autocombat (Candace Moore) #214
• 3d7b1c6: all autocombat harmonizations (Candace Moore) #214
• 7bc2e78: debug autocombat insight (Candace Moore) #214
• a3bfded: add all autocombat i.e. on edis (Candace Moore) #214
• 28dc292: neuroharmonizations (Candace Moore) #214
• 4a970e2: neuroharmonization notebooks (Candace Moore) #214
• a1fa20a: fix harmonization sex (Candace Moore) #214
• 57315df: implement covbat top vs mri (Candace Moore) #214
• c4ef3d4: finish covbat harmonizations (Candace Moore) #214
• 1955b9e: start covbat notebooks (Candace Moore) #214
• ccd6eca: finish covbat harm notebooks (Candace Moore) #214
• d0bc148: add plusplus harmonization top mri (Candace Moore) #214
• a88082c: finish all combat++ harmonizations (Candace Moore) #214
• 384bafb: notebook 1g (Candace Moore) #214
• 06e239b: negative checker function (Candace Moore) #214
• 542bb20: all plus notebooks (Candace Moore) #214
• 14f5247: proof covbat notebooks (Candace Moore) #214
• 4723ffb: more notebook proofinf (Candace Moore) #214
• 4193367: add 3f and 3g placeholders (Candace Moore) #214
• 2f598ac: try all os workflow (Candace Moore) #214
• 3660e08: one os workflow (Candace Moore) #214
• 67d79fc: new workflow for testing (Candace Moore) #214
• 857df44: clean new testing schema (Candace Moore) #214
• e5856d9: correct testcore (Candace Moore) #214
• b36242e: stechnical paper combat_GAM (Candace Moore) #214
• 28816cc: add ml2bd notebook (Candace Moore) #214
• c5f643f: fix open nexted harmonizations (Candace Moore) #214
• 2102234: finish fixing open nested (Candace Moore) #214
• 3ebedb5: update autocombat with helius (Candace Moore) #214
• 002ce37: add ml experiment 2ed (Candace Moore) #214
• 676ec49: add covbat 2fd improve 2fc (Candace Moore) #214
• 5dfa474: add plusplus harm and 2gd notebook (Candace Moore) #214
• 6bc3ae3: finish 3e (Candace Moore) #214
• 014a4ee: 5 way pluspus (Candace Moore) #214
• 8e90638: 3g (Candace Moore) #214
• b3f186a: debug 3a, 3e and 3g (Candace Moore) #214
• fccd4b0: try seperate windows workflow in ci (Candace Moore) #214
• cd40a0f: try windoes latest (Candace Moore) #214
• a8875ad: 1f changes (Candace Moore) #214
• 6d0c7aa: take out run signs 1f (Candace Moore) #214
• 545f543: take windows off text matrix (Candace Moore) #214
• 2d5ffc5: fix sex in unharmed 3 (Candace Moore) #214
• 7eebc78: update seperated, add peeler (Candace Moore) #214
• 07aa518: better column stripper (Candace Moore) #214
• 6c68495: real helius harmonized (Candace Moore) #214
• 263c104: no pushing wierd legacy stuff (Candace Moore) #214
• 41f6e8f: change helium to helius (Candace Moore) #214
• 541c78a: update neuroharmonization files (Candace Moore) #214
• 2cd368e: strip file replace in neuroharm (Candace Moore) #214
• 021ec95: correct sex mapping for helius,neuroHarm (Candace Moore) #214
• a067a10: change pytest version (Candace Moore) #214
• 65234fc: finalize autocombat (Candace Moore) #214
• 187a366: final neurcharm (Candace Moore) #214
• 22bad5f: final autocombats (Candace Moore) #214
• a405625: easy covbat (Candace Moore) #214
• 34d2f81: [fix] Build a wheel and then install using pip instead of setup.py install (Candace Moore) #214
• 094b141: all neurocombat except 5way (Candace Moore) #214
• f79930c: add skeleton 5 way neurocombat (Candace Moore) #214
• 0c92d26: add all open nested (Candace Moore) #214
• c9c301b: adjust to helius repeater in covbat (Candace Moore) #214
• f70fe04: update all combat++ R notebooks (Candace Moore) #214
• 0ed34f4: relocate neuroharmonize enviro (Candace Moore) #214
• d103cb2: further on neurocombat5 (Candace Moore) #214
• 63b8436: finish neuroharm 5 way (Candace Moore) #214
• de99e0d: lint harmony (Candace Moore) #214
• 7a8a441: update covbat file for 5 way (Candace Moore) #214
• 9d37c84: mild cleaning (Candace Moore) #214
• 668d670: invisible meaningless change (Candace Moore) #214
• d50d085: changelog and readme (Candace Moore) #214
• 38e851b: etc (Candace Moore) #214
• 1a3af18: start tox (Candace Moore) #214
• 5ae431d: setup for toxing (Candace Moore) #214
• ff33f73: docker tox (Candace Moore) #214
• f640a64: update docu on testing (Candace Moore) #214
• 12df487: nbstripout workflow (Candace Moore) #214
• 7f74d44: Clean up all notebooks using nbstrip (Candace Makeda Moore, MD) #216
• 7b05a70: Cleaned notebooks should be sent to premain (Candace Makeda Moore, MD) #217
• b00fe3d: fix kfolding less print and warn (Candace Moore) #220
• cc5e862: lint and check new flow (Candace Moore) #220
• b1b8781: get rid off data check (Candace Moore) #229
• 42a63ea: delete old data check (Candace Moore) #229
• 49f8889: squashing 3 months of commits (Candace Moore) #229
• b52334e: prepare for int setup (Candace Moore) #230
• fe76c6a: looser setup conda (Candace Moore) #231
• 42c13fc: change on-tag to macos-12 (Candace Moore) #232
• cc98d97: swtich condabuild to different action (Candace Moore) #233
• d3816d0: squash and rebase (Candace Moore) #234
• 3e465da: kill typo (Candace Moore) #234