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1 parent 43a5f9b commit 6f2b748Copy full SHA for 6f2b748
Dockerfile
@@ -40,7 +40,7 @@ RUN pip install captum==0.5.0 wandb tensorboard plotnine
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RUN pip install bioframe biopython genomepy scanpy \
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pyjaspar pyBigWig pyfaidx pytabix
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RUN pip install bpnet-lite>=0.5.7 ledidi enformer-pytorch genomepy statsmodels
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-RUN pip install pygenomeviz
+RUN pip install pygenomeviz tangermeme >= 0.4.0
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# Install modiscolite
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RUN pip install modisco-lite@git+https://github.com/jmschrei/tfmodisco-lite.git
setup.cfg
@@ -70,7 +70,7 @@ install_requires =
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logomaker >= 0.8
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pyBigWig
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ledidi
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- tangermeme
+ tangermeme >= 0.4.0
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pygenomeviz <= 0.4.4
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statsmodels >=0.11.1
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