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@Genentech

Genentech

Dedicated to pursuing groundbreaking science to discover and develop medicines

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  1. equifold equifold Public

    Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

    Python 120 17

  2. scimilarity scimilarity Public

    A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

    Python 183 7

  3. polygraph polygraph Public

    Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

    Jupyter Notebook 28

  4. gReLU gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Python 256 30

Repositories

Showing 10 of 114 repositories
  • decima Public

    Decima is a Python library to train sequence models on single-cell RNA-seq data.

    Genentech/decima’s past year of commit activity
    Jupyter Notebook 32 4 1 0 Updated Apr 10, 2025
  • nfnull Public
    Genentech/nfnull’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 10, 2025
  • beignet Public

    A standard library for biological research.

    Genentech/beignet’s past year of commit activity
    Python 22 MIT 5 32 23 Updated Apr 10, 2025
  • spex_spatial_transcriptomics Public
    Genentech/spex_spatial_transcriptomics’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 9, 2025
  • spex_bundle Public
    Genentech/spex_bundle’s past year of commit activity
    PLpgSQL 1 0 0 0 Updated Apr 9, 2025
  • phase1b Public
    Genentech/phase1b’s past year of commit activity
    R 5 2 17 0 Updated Apr 8, 2025
  • spex Public
    Genentech/spex’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Apr 8, 2025
  • SpatialAgent Public
    Genentech/SpatialAgent’s past year of commit activity
    55 MIT 2 0 0 Updated Apr 5, 2025
  • spex_segmentation Public
    Genentech/spex_segmentation’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 2, 2025
  • spex_clustering Public
    Genentech/spex_clustering’s past year of commit activity
    Python 0 0 0 0 Updated Apr 2, 2025
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