Combination PR (use FMS tracer_manager for tracer parsing, ECMWF non-stationary GWD changes, other misc. physics changes)

[grantfirl]

Description

This PR contains many physics bugfixes and updates described in ufs-community/ccpp-physics#295. The only physics changes requiring changes to the code in fv3atm are as follows:

• Removal of gfdl_parse_tracers.F90 file from physics: Remove GFDL_parse_tracers.F90 (was: Add NRL_parse_tracers.F90 as a replacement for GFDL_parse_tracers.F90 for NEPTUNE) NCAR/ccpp-physics#1087
  • Currently, there is a dependence of GFS_typedefs.F90 on a parse_tracers module in the GFDL MP scheme in the CCPP physics. This was undesirable for NRL NEPTUNE (see Remove GFDL_parse_tracers.F90 (was: Add NRL_parse_tracers.F90 as a replacement for GFDL_parse_tracers.F90 for NEPTUNE) NCAR/ccpp-physics#1087). For the SCM, the parse_tracers subroutine was moved to GFS_typedefs.F90 itself, since that made the most sense (see Updated version of "Move parse_tracers file from physics to host" NCAR/ccpp-scm#569). For the FV3, the get_tracer_index function already exists within the FMS library and is used elsewhere in the code, so, to avoid confusion, it seems logical for GFS_typedefs.F90 to use the FMS version too. A wrapper for the get_tracer_index was added to GFS_typedefs.F90 because the FMS version returns a large negative integer for a missing tracer, whereas the rest of the physics code expects missing tracers to have an integer value of -99.
• Changes required to work with the ECMWF non-stationary gravity wave drag provided by @BoYang-NOAA: Add ECMWF non-stationary gravity wave scheme option #952
  • Add ECMWF Non-stationary gravity wave scheme in UGWDV1 gravity wave suite. If do_ngw_ec is set to true, use the ECMWF NGWD scheme. Conversely, if do_ngw_ec is false, use the original UGWDv1 NGWD scheme. do_ngw_ec is set to false by default.
  • tested on Hera with intel; WCOSS2
• Combines Bug fix to maxMF check: only access when do_mynnedmf=.true. #968 (credit @SamuelTrahanNOAA )
  • fixes Crash in cu_c3_driver.F90 when not using mynn edmf due to access of unallocated maxMF array. ufs-community/ccpp-physics#282

Issue(s) addressed

None

Testing

There has been significant testing of individual pieces of this work. Each PR that had been targeted to ufs/dev individually had been tested by itself using UFS RTs on supported platforms. The update to NCAR:main branch was tested together with the removal of gfdl_parse_tracers.F90 changes in GFS_typedefs using UFS RTs on Hera.

Dependencies

ufs-community/ccpp-physics#295

[grantfirl]

Replaces:
#952
#968

[rhaesung]

@grantfirl ufs-community/ccpp-physics#295 has been merged. Please update the submodule pointer for ccpp-physics ( ufs-community/ccpp-physics@ef272c1) and revert the .gitmodules file in preparation for the merge.

[grantfirl]

@jkbk2004 Submodule updated and ready for review/merge