Provided Software

Philosopher provides easy access to the following third-party software:

• ProteoWizard msconvert

• ProteoWizard idconvert

• Comet

• PeptideProphet

• ProteinProphet

• iProphet

• PTMProphet

Available Implementations

The following algorithms are available as complete or partial native implementations:

• moFF

• Abacus