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ENH/circleci_rversion #52

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@zhao-cy zhao-cy commented Apr 5, 2022

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Chenying Zhao added 16 commits March 22, 2022 22:54
add Dockerfile for test0.0.0
008957e
include R 4.1.0 in circle ci tests
7840558
try matrixStats version >= 0.61.0 for circle ci R version 4.1.0
ef0de21
directly install MatrixGenerics that DelayedArray depends on
2470c78
include both matrixStats and MatrixGenerics in DESCRIPTION file
9a08ff7
delete matrixStats and MatrixGenerics in the DESCRIPTION list; also d…
b834417 
…elete the comma at the end
test R version 3.6.0; also update required R version in DESCRIPTION
576912b
try R version 3.6.3; also updated required R version in DESCRIPTION
1cc5fde
added as.character() as R 3.6.3 will take phenotypes[[source_file]] a…
b5cfe01 
…s factors instead of characters which leads to error of 'matching source file names were not successful'
add package version requirements for R 3.6.3
10eb12f
Merge branch 'enh/circleci_rversion' of https://github.com/PennLINC/M…
1f2884e 
…odelArray into enh/circleci_rversion
install specific vctrs package in docker ahead of install with DESCRI…
24d6d68 
…PTION
change the order of install dependent R packages in docker image
2cdecef
add upgrade='always' when devtools::install_deps()
2e1bb19
only use install.packages() to install vctrs without specify .tar.gz …
1dc1527 
…with version number
remove cache
6f4684c
@TinasheMTapera
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TinasheMTapera commented Apr 8, 2022

we should just test locally tbh, I'm gonna do it like this https://www.maxturgeon.ca/multiple-r-versions

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TinasheMTapera commented Apr 8, 2022

Steps taken:

  1. Download RSwitch to allow quick switching between running R versions in Rstudio
  2. Download a version binary tarball with rversions
  3. Untar it cd / && tar -xvzf ~/Downloads/R-YOUR.VERSION.NUMBER.tar.gz
  4. Use RSwitch to change over in Rstudio (not sure how it does this, some kinda sorcery)
  5. Test

@zhao-cy zhao-cy linked an issue Apr 11, 2022 that may be closed by this pull request
[ENH] build docker image for ModelArray + ConFixel #44
Closed
@zhao-cy zhao-cy removed a link to an issue Apr 11, 2022
[ENH] build docker image for ModelArray + ConFixel #44
Closed
@zhao-cy zhao-cy linked an issue Apr 11, 2022 that may be closed by this pull request
[ENH] CircleCI: support stable R versions #48
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[ENH] CircleCI: support stable R versions

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@zhao-cy @TinasheMTapera