Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

⬆️ Upgrade C-PAC bootstrap to v1.8.5 from v1.8.3 #39

Draft
wants to merge 33 commits into
base: main
Choose a base branch
from
Draft

⬆️ Upgrade C-PAC bootstrap to v1.8.5 from v1.8.3 #39

wants to merge 33 commits into from

Commits on Apr 1, 2021

  1. add submit script

    @mattcieslak
    mattcieslak committed Apr 1, 2021
    Configuration menu
    Copy the full SHA
    54da6ee View commit details
    Browse the repository at this point in the history

  2. working scripts

    @mattcieslak
    mattcieslak committed Apr 1, 2021
    Configuration menu
    Copy the full SHA
    d5b68c8 View commit details
    Browse the repository at this point in the history

Commits on Apr 2, 2021

  1. use explicit for prep run

    @mattcieslak
    mattcieslak committed Apr 2, 2021
    Configuration menu
    Copy the full SHA
    2b76e07 View commit details
    Browse the repository at this point in the history

Commits on Apr 13, 2021

  1. Add merging script

    @mattcieslak
    mattcieslak committed Apr 13, 2021
    Configuration menu
    Copy the full SHA
    704232b View commit details
    Browse the repository at this point in the history

Commits on Apr 15, 2021

  1. add projectroot to merge script

    @mattcieslak
    mattcieslak committed Apr 15, 2021
    Configuration menu
    Copy the full SHA
    ac0b593 View commit details
    Browse the repository at this point in the history

  2. use arg

    @mattcieslak
    mattcieslak committed Apr 15, 2021
    Configuration menu
    Copy the full SHA
    e01188d View commit details
    Browse the repository at this point in the history

  3. Don't check for conda, use tempdir

    @mattcieslak
    mattcieslak committed Apr 15, 2021
    Configuration menu
    Copy the full SHA
    4946f51 View commit details
    Browse the repository at this point in the history

Commits on Apr 16, 2021

  1. space

    @mattcieslak
    mattcieslak committed Apr 16, 2021
    Configuration menu
    Copy the full SHA
    b0a3ccc View commit details
    Browse the repository at this point in the history

Commits on Apr 21, 2021

  1. Write to 2mm mni by default

    @mattcieslak
    mattcieslak committed Apr 21, 2021
    Configuration menu
    Copy the full SHA
    c3c092d View commit details
    Browse the repository at this point in the history

  2. remove double arg

    @mattcieslak
    mattcieslak committed Apr 21, 2021
    Configuration menu
    Copy the full SHA
    6efb6dd View commit details
    Browse the repository at this point in the history

Commits on Apr 22, 2021

  1. run zip with bash

    @mattcieslak
    mattcieslak committed Apr 22, 2021
    Configuration menu
    Copy the full SHA
    b3f9fc8 View commit details
    Browse the repository at this point in the history

Commits on Apr 29, 2021

  1. clear out remotes from the containers ds

    @mattcieslak
    mattcieslak committed Apr 29, 2021
    Configuration menu
    Copy the full SHA
    037047b View commit details
    Browse the repository at this point in the history

Commits on May 4, 2021

  1. add script for fmriprep audit

    @mattcieslak
    mattcieslak committed May 4, 2021
    Configuration menu
    Copy the full SHA
    175eea5 View commit details
    Browse the repository at this point in the history

Commits on Jun 9, 2021

  1. wget a merge script

    @mattcieslak
    mattcieslak committed Jun 9, 2021
    Configuration menu
    Copy the full SHA
    48627f3 View commit details
    Browse the repository at this point in the history

  2. new alias

    @mb3152
    mb3152 committed Jun 9, 2021
    Configuration menu
    Copy the full SHA
    8edb98c View commit details
    Browse the repository at this point in the history

Commits on Aug 13, 2021

  1. Update bootstrap-fmriprep.sh

    @scovitz
    scovitz authored Aug 13, 2021
    Configuration menu
    Copy the full SHA
    dbe8019 View commit details
    Browse the repository at this point in the history

Commits on Aug 18, 2021

  1. Update bootstrap-fmriprep.sh

    @scovitz @shnizzedy
    scovitz authored and shnizzedy committed Aug 18, 2021
    Configuration menu
    Copy the full SHA
    5ebab29 View commit details
    Browse the repository at this point in the history

Commits on Aug 19, 2021

  1. added garbage collection

    @scovitz
    scovitz authored Aug 19, 2021
    Configuration menu
    Copy the full SHA
    140c375 View commit details
    Browse the repository at this point in the history

Commits on Aug 20, 2021

  1. 🔀 Merge main into C-PAC-1.8.1-dev

    @shnizzedy
    shnizzedy committed Aug 20, 2021
    Configuration menu
    Copy the full SHA
    5b467f2 View commit details
    Browse the repository at this point in the history

Commits on Sep 13, 2021

  1. Update bootstrap-fmriprep.sh

    @scovitz
    scovitz authored Sep 13, 2021
    Configuration menu
    Copy the full SHA
    cbe3b9e View commit details
    Browse the repository at this point in the history

Commits on Sep 21, 2021

  1. Update bootstrap-fmriprep.sh (PennLINC#25) 

    modified the -w directory in singularity run of fmriprep_zip.sh
    @YumekaMengjiaLYU
    YumekaMengjiaLYU authored Sep 21, 2021
    Configuration menu
    Copy the full SHA
    f49cec4 View commit details
    Browse the repository at this point in the history

  2. Update bootstrap-qsirecon.sh (PennLINC#30) 

    fixed typo
    @YumekaMengjiaLYU
    YumekaMengjiaLYU authored Sep 21, 2021
    Configuration menu
    Copy the full SHA
    84a5f98 View commit details
    Browse the repository at this point in the history

Commits on Oct 27, 2021

  1. added reservation flag to qsub_calls.sh

    @scovitz
    scovitz authored Oct 27, 2021
    Configuration menu
    Copy the full SHA
    25e6dea View commit details
    Browse the repository at this point in the history

  2. added -h_rt flag for 24h

    @scovitz
    scovitz authored Oct 27, 2021
    Configuration menu
    Copy the full SHA
    919747a View commit details
    Browse the repository at this point in the history

  3. Update bootstrap-fmriprep.sh

    @scovitz
    scovitz authored Oct 27, 2021
    Configuration menu
    Copy the full SHA
    537a722 View commit details
    Browse the repository at this point in the history

  4. Update bootstrap-fmriprep.sh

    @scovitz
    scovitz authored Oct 27, 2021
    Configuration menu
    Copy the full SHA
    9b86fe6 View commit details
    Browse the repository at this point in the history

  5. Update bootstrap-fmriprep.sh

    @scovitz
    scovitz authored Oct 27, 2021
    Configuration menu
    Copy the full SHA
    9fd70f1 View commit details
    Browse the repository at this point in the history

Commits on Oct 28, 2021

  1. -r to -R

    @scovitz
    scovitz authored Oct 28, 2021
    Configuration menu
    Copy the full SHA
    773e0c5 View commit details
    Browse the repository at this point in the history

Commits on Nov 1, 2021

  1. Update bootstrap-fmriprep.sh

    @scovitz
    scovitz authored Nov 1, 2021
    Configuration menu
    Copy the full SHA
    9f5f4a5 View commit details
    Browse the repository at this point in the history

Commits on Jan 7, 2022

  1. Update bootstrap-fmriprep.sh

    @scovitz
    scovitz authored Jan 7, 2022
    Configuration menu
    Copy the full SHA
    9f31fd1 View commit details
    Browse the repository at this point in the history

Commits on Feb 14, 2022

  1. Merge branch 'PennLINC:main' into C-PAC-1.8.3

    @shnizzedy
    shnizzedy authored Feb 14, 2022
    Configuration menu
    Copy the full SHA
    a5d9037 View commit details
    Browse the repository at this point in the history

Commits on Jul 7, 2022

  1. 🔀 Merge multises setup from fmriprep-multises bootstrap into c-pac bo… 

    …otstrap
    @shnizzedy
    shnizzedy committed Jul 7, 2022
    Configuration menu
    Copy the full SHA
    b1583e9 View commit details
    Browse the repository at this point in the history

  2. 🔀 Merge main into C-PAC-1.8.5

    @shnizzedy
    shnizzedy committed Jul 7, 2022
    Configuration menu
    Copy the full SHA
    58c4dce View commit details
    Browse the repository at this point in the history