Code

Refactor SCORE/SCRUB and BASIL#253

Code

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tsalo wants to merge 33 commits intoPennLINC:mainPennLINC/aslprep:mainfrom tsalo:refactor-score-scrubtsalo/aslprep:refactor-score-scrubCopy head branch name to clipboard

+280-220

Commits

Commits on Mar 29, 2023

• Make --basil and --scorescrub mutually exclusive.

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  67cebd9

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Commits on Apr 4, 2023

• Merge remote-tracking branch 'upstream/main' into basil-mutex

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  994e491

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• Rename CBF computation workflows.

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  d5b03ef

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• Clean up SCORE code.

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  8acc889

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• Fix misc. bugs.

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  337274d

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• Rename SCORE/SCRUB outputs.

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  adb7ace

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• Patch connections.

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  535814a

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• Patch more connections.

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• Rename and document BASIL inputs and outputs.

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  292b0c0

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• Drop mutual exclusion for this PR.

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  3e35cf1

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• Update parser.py

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  4602ef0

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• Split off QC interfaces.

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• Merge remote-tracking branch 'upstream/main' into refactor-score-scrub

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  b24b572

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• Start refactoring _scrub_csf.

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  051d125

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• Fix bug I introduced in SCORE.

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Commits on Apr 5, 2023

• Update .gitignore

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  7588d34

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• Simplify _get_wfun_weight.

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Commits on Apr 6, 2023

• Continue, not break.

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Commits on May 25, 2023

• Merge remote-tracking branch 'upstream/main' into refactor-score-scrub

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  5bfd929

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• Reimplement refactor of SCRUB/SCORE code.

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  66ee1fc

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• Rename the functions.

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  bb4c600

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• Update cbf.py

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  ed3a569

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• Fix connection.

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  658e1d8

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• Update cbf.py

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  5316259

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• Update.

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Commits on May 26, 2023

• Update cbf.py

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• Rename wavelet_function to cost_function.

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  4fa33ba

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• Keep working on SCRUB.

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Commits on Jun 1, 2023

• Merge remote-tracking branch 'upstream/main' into refactor-score-scrub

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Commits on Dec 12, 2023

• Merge remote-tracking branch 'upstream/main' into refactor-score-scrub

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  8cbcc00

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• Address style issues.

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  d099a5e

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• Remove unused import.

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Commits on Jan 9, 2024

• Merge remote-tracking branch 'upstream/main' into refactor-score-scrub

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