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Update smriprep requirement from <=0.16.0 to <=0.16.1 #439

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merged 1 commit into from
Sep 2, 2024

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Updates the requirements on smriprep to permit the latest version.

Release notes

Sourced from smriprep's releases.

0.16.1

Release Notes

A bug-fix release that reworks selection within the FreeSurfer to native segmentation resampling workflow.

Changelog

Changelog

Sourced from smriprep's changelog.

0.16.1 (August 26, 2024)

A bug-fix release that reworks selection within the FreeSurfer to native segmentation resampling workflow.

  • FIX: Select function in segmentation resampling workflow (#450)

0.16.0 (July 31, 2024)

Start of the 0.16.x minor series.

This release decouples much of the hardcoded T1w behavior in favor of T1w/T2w options, to allow easier integration with tools less reliant on a single anatomical scan.

  • ENH: Use genericised "anat" input/output for TemplateDimensions (#443)
  • ENH: Remove much of the hardcoded T1w fields in favor of anat (#433)
  • RF: Load package data with acres (#448)
  • RF: space-fsaverage to sphere_reg output files (#446)
  • MNT: Unpin libitk 5.3 (ANTs 2.5.3 is built with 5.4) (#445)
  • MNT: Clean up doc builds, environment, style checks (#444)

0.15.0 (March 22, 2024)

New feature release in the 0.15.x series.

This release adds the workflow configuration option and CLI option to reuse existing FreeSurfer outputs without attempting to resume. This should allow for using longitudinal or non-standard pipelines (for example, FastSurfer) without additional tooling for each variant.

  • FIX: Patch version for smriprep-docker (#424)
  • FIX: Require recent templateflow, select correct aparc dseg.tsv (#420)
  • ENH: Add --fs-no-resume option to reuse existing FreeSurfer outputs without resuming (#393)
  • MNT: set copyright owner in LICENSE file (#426)
  • MNT: Apply Repo-Review suggestions (#422)
  • CI: Small cleanups to GHA (#423)

0.14.0 (March 11, 2024)

New feature release in the 0.14.x series.

This release restores correct handling of cohort identifiers in templates. A feature release is warranted due to changes in the workflow structure.

  • FIX: Fetch templates during workflow construction (#418)
  • FIX: Re-add cohort identifier to template name (#416)
  • FIX: Repair FreeSurfer Dependency in Dockerfile (tcsh) (#404)

... (truncated)

Commits
  • 3442afe rel(0.16.1): update changes
  • 60f26d2 Merge pull request #450 from nipreps/fix/aparc-select
  • 4738420 TST: Fix test input
  • 530ce37 FIX: Output name
  • 0cfde86 TST: Add test for standalone function
  • f2ea08d RF: Move filtering into standalone custom function
  • 477f17c FIX: Select function in segmentation resampling workflow
  • f368a28 Merge tag '0.16.0'
  • 3f80312 maint: set niworkflows pin [skip ci]
  • ade513b rel(0.16.0): update changes [skip ci]
  • Additional commits viewable in compare view

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Updates the requirements on [smriprep](https://github.com/nipreps/smriprep) to permit the latest version.
- [Release notes](https://github.com/nipreps/smriprep/releases)
- [Changelog](https://github.com/nipreps/smriprep/blob/master/CHANGES.rst)
- [Commits](nipreps/smriprep@0.0.1...0.16.1)

---
updated-dependencies:
- dependency-name: smriprep
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added ignore-for-release PRs that shouldn't be included with release notes. maintenance Issues/PRs related to maintenance. Dependency versions, dependencies, etc. labels Sep 2, 2024
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 84.34%. Comparing base (77c302f) to head (a511093).

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #439   +/-   ##
=======================================
  Coverage   84.34%   84.34%           
=======================================
  Files          37       37           
  Lines        3986     3986           
=======================================
  Hits         3362     3362           
  Misses        624      624           

☔ View full report in Codecov by Sentry.
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@tsalo tsalo merged commit 985c833 into main Sep 2, 2024
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@dependabot dependabot bot deleted the dependabot/pip/smriprep-lte-0.16.1 branch September 2, 2024 15:13
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