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Update sdcflows requirement from <=2.10.0 to <=2.11.0 #477

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merged 1 commit into from
Dec 23, 2024

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@dependabot dependabot bot commented on behalf of github Dec 23, 2024

Updates the requirements on sdcflows to permit the latest version.

Release notes

Sourced from sdcflows's releases.

2.11.0

Release notes

Feature release in the 2.11.x series.

This release supports numpy 2 and Python 3.13.

Changes

  • FIX: Normalize BIDS-URIs to subject-relative (#458)
  • FIX: Only fit high-frequency spline for SyN-SDC (#457)
  • ENH: Allow Jacobian correction to be toggled on/off (#462)
  • ENH: Dilate fmap and bold masks during coregistration (#463)
  • TEST: Clear registry consistently to avoid order dependency (#464)
  • DOC: Plot correct workflow in init_syn_preprocessing_wf docstring (#460)
  • CI: Drop CircleCI, using GHA only (#459)

New Contributors

Full Changelog: nipreps/sdcflows@2.10.0...2.11.0

Changelog

Sourced from sdcflows's changelog.

2.11.0 (December 18, 2024)

Feature release in the 2.11.x series.

This release supports numpy 2 and Python 3.13.

  • FIX: Normalize BIDS-URIs to subject-relative (#458)
  • FIX: Only fit high-frequency spline for SyN-SDC (#457)
  • ENH: Allow Jacobian correction to be toggled on/off (#462)
  • ENH: Dilate fmap and bold masks during coregistration (#463)
  • TEST: Clear registry consistently to avoid order dependency (#464)
  • DOC: Plot correct workflow in init_syn_preprocessing_wf docstring (#460)
  • CI: Drop CircleCI, using GHA only (#459)

2.10.0 (July 04, 2024)

Feature release in the 2.10.x series.

The main change is a bugfix when fitting multi-level B-Splines to some noisy fieldmaps. The multi-level fitting, while being theoretically nice, does not really bring anything immediately as we are not generally inverting the distortion. In this release, the default fitting has been change to single-level B-Splines, with a spacing similar to TOPUP's defaults.

With thanks to Sunjae Shim (@​sjshim) for sharing Spiral-echo fieldmaps that were failing prior the patch in #453.

CHANGES

  • FIX: Revision of the B-Spline fitting code (#453)
  • FIX: Building Docker image on ARM64 devices (#449)
  • ENH: Improve plots in jupyter notebook (#452)
  • DOC: Fix ValueError in notebook's output. (#450)

2.9.0 (June 13, 2024)

Feature release in the 2.9.x series.

The main change is that B0FieldIdentifiers with special characters are now sanitized and exposed through a FieldmapEstimator.sanitized_id attribute.

Workflow names and input/output connections will use sanitized_id, to ensure compatibility with filenames and workflow graph generation. Internal lookup tables will continue to use the the unsanitized bids_id.

... (truncated)

Commits
  • 03076bd rel(2.11.0): Update changes
  • 9327216 chore(ci): Fix triggers
  • d81518e Merge pull request #472 from effigies/tox-uv
  • 9eb9cd6 chore(ci): Run cache_templateflow with a script runner
  • 5376caf chore(ci): Remove unnecessary install step, move checkout to top
  • 5675855 chore: Advertise Python 3.13 support
  • 4b309fa fix: Drop deprecated TraitDictAnys
  • ae622c8 chore: Test on py313, set UV variables appropriately
  • 3513638 chore(ci): Drop pre-release tests for out-of-SPEC0 Python
  • 233e0f8 chore(ci): Show contents of AFNI_HOME, ensure it is on PATH
  • Additional commits viewable in compare view

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@dependabot dependabot bot added ignore-for-release PRs that shouldn't be included with release notes. maintenance Issues/PRs related to maintenance. Dependency versions, dependencies, etc. labels Dec 23, 2024
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codecov-commenter commented Dec 23, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 83.83%. Comparing base (f212794) to head (de71b62).
Report is 1 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #477   +/-   ##
=======================================
  Coverage   83.83%   83.83%           
=======================================
  Files          38       38           
  Lines        4016     4016           
=======================================
  Hits         3367     3367           
  Misses        649      649           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

Updates the requirements on [sdcflows](https://github.com/nipreps/sdcflows) to permit the latest version.
- [Release notes](https://github.com/nipreps/sdcflows/releases)
- [Changelog](https://github.com/nipreps/sdcflows/blob/master/CHANGES.rst)
- [Commits](nipreps/sdcflows@0.0.1...2.11.0)

---
updated-dependencies:
- dependency-name: sdcflows
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/pip/sdcflows-lte-2.11.0 branch from 822d675 to de71b62 Compare December 23, 2024 15:43
@tsalo tsalo merged commit a2dc27d into main Dec 23, 2024
26 checks passed
@tsalo tsalo deleted the dependabot/pip/sdcflows-lte-2.11.0 branch December 23, 2024 19:25
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