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Update Dockerfile
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tsalo committed Apr 12, 2024
1 parent 93ea971 commit 3824d60
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12 changes: 0 additions & 12 deletions Dockerfile
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Expand Up @@ -241,18 +241,6 @@ ENV PATH="/opt/conda/envs/aslprep/bin:$PATH" \
CPATH="/opt/conda/envs/aslprep/include:$CPATH" \
LD_LIBRARY_PATH="/opt/conda/envs/aslprep/lib:$LD_LIBRARY_PATH"

# FSL environment
ENV LANG="C.UTF-8" \
LC_ALL="C.UTF-8" \
PYTHONNOUSERSITE=1 \
FSLDIR="/opt/conda/envs/aslprep" \
FSLOUTPUTTYPE="NIFTI_GZ" \
FSLMULTIFILEQUIT="TRUE" \
FSLLOCKDIR="" \
FSLMACHINELIST="" \
FSLREMOTECALL="" \
FSLGECUDAQ="cuda.q"

# Unless otherwise specified each process should only use one thread - nipype
# will handle parallelization
ENV MKL_NUM_THREADS=1 \
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