Hcp make wm vent mask

[cindyhfls]

Making individual masks for HCP output followed from this: https://neurostars.org/t/differences-in-dcan-derivatives-and-hcp-ya-outputs/30631/2

Changes proposed in this pull request

Documentation that should be reviewed

[codecov]

Codecov Report

Attention: Patch coverage is 5.00000% with 19 lines in your changes missing coverage. Please review.

Project coverage is 78.46%. Comparing base (68caadf) to head (2211cda).

Files with missing lines	Patch %	Lines
xcp_d/ingression/utils.py	6.66%	14 Missing ⚠️
xcp_d/ingression/hcpya.py	0.00%	5 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1279      +/-   ##
==========================================
- Coverage   78.63%   78.46%   -0.18%     
==========================================
  Files          59       59              
  Lines        7308     7326      +18     
  Branches     1106     1108       +2     
==========================================
+ Hits         5747     5748       +1     
- Misses       1273     1290      +17     
  Partials      288      288              

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[cindyhfls]

This needs the installation of fsl: https://nipype.readthedocs.io/en/latest/users/examples/fmri_fsl.html

[tsalo]

I recently managed to remove FSL from the XCP-D Docker image and I'm not planning to add it back in. As far as I can tell, you can accomplish everything you're currently doing with fslmaths with Python tools. I would recommend using Python libraries, as the other ingression functions do.

[cindyhfls]

i tried that but I could not reproduce the same erosion effect with python, feel free to implement thatOn Oct 15, 2024, at 8:14 AM, Taylor Salo ***@***.***> wrote: I recently managed to remove FSL from the XCP-D Docker image and I'm not planning to add it back in. As far as I can tell, you can accomplish everything you're currently doing with fslmaths with Python tools. I would recommend using Python libraries, as the other ingression functions do. —Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you authored the thread.Message ID: ***@***.***>