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Add more FSL libraries. (#15)
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tsalo authored Feb 17, 2023
1 parent 8dcdaa1 commit 1542b06
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -94,6 +94,8 @@ COPY --from=build_fsl /usr/bin/fsl5.0-slicer /opt/fsl/bin/fsl-5.0-slicer
COPY --from=build_fsl /usr/bin/fsl5.0-slicesdir /opt/fsl/bin/fsl5.0-slicesdir
COPY --from=build_fsl /usr/bin/fsl5.0-pngappend /opt/fsl/bin/fsl5.0-pngappend
COPY --from=build_fsl /usr/bin/fsl5.0-remove_ext /opt/fsl/bin/fsl5.0-remove_ext
COPY --from=build_fsl /usr/lib/fsl/5.0/libnewimage.so /opt/fsl/lib/libnewimage.so
COPY --from=build_fsl /usr/lib/fsl/5.0/libmiscmaths.so /opt/fsl/lib/libmiscmaths.so
ENV FSLDIR="/opt/fsl/lib" \
FSLOUTPUTTYPE="NIFTI_GZ" \
FSLMULTIFILEQUIT="TRUE" \
Expand All @@ -102,8 +104,8 @@ ENV FSLDIR="/opt/fsl/lib" \
FSLREMOTECALL="" \
FSLGECUDAQ="cuda.q" \
LD_LIBRARY_PATH="/opt/fsl/lib:$LD_LIBRARY_PATH" \
PATH="/opt/fsl:$PATH" \
FSL_DEPS="libquadmath0"
PATH="/opt/fsl/lib:/opt/fsl/bin:$PATH" \
FSL_DEPS="libquadmath0;libnewimage.so;libmiscmaths.so"

# Install FreeSurfer
RUN curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.1/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1.tar.gz | tar zxv --no-same-owner -C /opt \
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