URDME 1.5

This version is URDME Version 1.5. For a complete documentation, refer to the manual under doc/ or available via arXiv.

Chiefly, novelties in this version include

• The format of the URDME structure has been updated.
• Minor improvements to the solvers have been made. Models with time dependent data are now supported.
• Analytical Jacobians with respect to the state variables can now be constructed.
• The workflow DLCM, for modeling of populations of cells, has been completely revised and now constitutes a specific solver for cell population models. Please refer to the README available within the workflow's directory.

U14.5 Intermediate release

This is a minor release in preparation of the full release U15.

• New model Hes1 under the DLCM workflow with preprint coming to arXiv soon
• Minor improvements all over, mainly safety and minor bugs/inconveniences
• Preparation for larger changes to solvers scheduled for U15

URDME 1.4

New major release of URDME v.1.4.0. Contains, amongst others:

• Solidified URDME-interface functions and datatypes
• Several minor improvements to solvers
• Expanded on automatic C code generation
• Three new workflows are now distributed with URDME: subdiffusion, neuron, and DLCM

Check the manual for details, distributed under doc/ and soon available via arXiv.

URDME 1.3

URDME 1.3 major release

Features:

• new streamlined and efficient interface
• several new solvers
• support for Comsol 5.x and PDE Toolbox
• efficient C-code generation
• and more

Bugfix release

Fixes two bugs, see RELEASE_NOTES for details.