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Improvements to full mapping database build #22

Merged
merged 23 commits into from
Apr 30, 2024
Merged

Improvements to full mapping database build #22

merged 23 commits into from
Apr 30, 2024

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cthoyt
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@cthoyt cthoyt commented Apr 24, 2024

  1. Add zenodo uploads
  2. Write configuration to output directory
  3. Demonstrate automated upload on protein complex landscape
  4. Add automated upload to full database build

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codecov bot commented Apr 30, 2024

Codecov Report

Attention: Patch coverage is 12.21719% with 194 lines in your changes are missing coverage. Please review.

Project coverage is 29.81%. Comparing base (69f251c) to head (7c9abbd).
Report is 12 commits behind head on main.

Files Patch % Lines
src/semra/database.py 0.00% 60 Missing ⚠️
src/semra/io.py 12.69% 54 Missing and 1 partial ⚠️
src/semra/pipeline.py 24.56% 42 Missing and 1 partial ⚠️
src/semra/sources/pubchem.py 11.11% 16 Missing ⚠️
src/semra/landscape/complexes.py 0.00% 5 Missing ⚠️
src/semra/sources/wikidata.py 20.00% 4 Missing ⚠️
src/semra/landscape/anatomy.py 0.00% 2 Missing ⚠️
src/semra/landscape/cells.py 0.00% 2 Missing ⚠️
src/semra/landscape/diseases.py 0.00% 2 Missing ⚠️
src/semra/landscape/genes.py 0.00% 2 Missing ⚠️
... and 2 more
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #22      +/-   ##
==========================================
- Coverage   36.45%   29.81%   -6.65%     
==========================================
  Files          22       31       +9     
  Lines        1558     2291     +733     
  Branches      334      431      +97     
==========================================
+ Hits          568      683     +115     
- Misses        958     1571     +613     
- Partials       32       37       +5     

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@cthoyt cthoyt merged commit 8888095 into main Apr 30, 2024
5 of 10 checks passed
@cthoyt cthoyt deleted the full-build branch April 30, 2024 14:37
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