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Improvements to full mapping database build #22

Merged
merged 23 commits into from
Apr 30, 2024
Merged

Improvements to full mapping database build #22

merged 23 commits into from
Apr 30, 2024

Commits on Apr 24, 2024

  1. Improvements to full mapping database build 

    1. Add zenodo uploads
2. Write configuration to output directory
3. Demonstrate automated upload on protein complex landscape
4. Add automated upload to full database build
    @cthoyt
    cthoyt committed Apr 24, 2024
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  2. Update pubchem-mesh source

    @cthoyt
    cthoyt committed Apr 24, 2024
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  3. Add default confidence to bioontologies importer

    @cthoyt
    cthoyt committed Apr 24, 2024
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  4. Gzip pickles

    @cthoyt
    cthoyt committed Apr 24, 2024
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  5. Improve summary tsv export

    @cthoyt
    cthoyt committed Apr 24, 2024
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  6. Add specific wikidata build

    @cthoyt
    cthoyt committed Apr 24, 2024
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  7. lint

    @cthoyt
    cthoyt committed Apr 24, 2024
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Commits on Apr 29, 2024

  1. Add explicit configuration files

    @cthoyt
    cthoyt committed Apr 29, 2024
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  2. Add link to raw mapping database

    @cthoyt
    cthoyt committed Apr 29, 2024
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  3. Update build

    @cthoyt
    cthoyt committed Apr 29, 2024
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  4. Clean up wikidata build

    @cthoyt
    cthoyt committed Apr 29, 2024
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  5. Skip progress on famplex

    @cthoyt
    cthoyt committed Apr 29, 2024
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  6. Fix order in chembl target build

    @cthoyt
    cthoyt committed Apr 29, 2024
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  7. Update complexes.py

    @cthoyt
    cthoyt committed Apr 29, 2024
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  8. Update neo4j and other outputs

    @cthoyt
    cthoyt committed Apr 29, 2024
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Commits on Apr 30, 2024

  1. Add zenodo upload workflow and config for landscapes

    @cthoyt
    cthoyt committed Apr 30, 2024
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  2. Update configurations

    @cthoyt
    cthoyt committed Apr 30, 2024
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  3. Update pipeline.py

    @cthoyt
    cthoyt committed Apr 30, 2024
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  4. Finish updating other mapping databases

    @cthoyt
    cthoyt committed Apr 30, 2024
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  5. Fix deposition IDs

    @cthoyt
    cthoyt committed Apr 30, 2024
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  6. Update configurations

    @cthoyt
    cthoyt committed Apr 30, 2024
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  7. Update landscape.py

    @cthoyt
    cthoyt committed Apr 30, 2024
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  8. Update README.md

    @cthoyt
    cthoyt committed Apr 30, 2024
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