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Improve performance of pdbx.compress() #547

Improve performance of pdbx.compress()

Improve performance of pdbx.compress() #547

Triggered via pull request October 17, 2024 10:58
Status Failure
Total duration 11m 13s
Artifacts 8

test_and_deploy.yml

on: pull_request
Test interfaces to databases and applications
4m 57s
Test interfaces to databases and applications
Generate wheels matrix
13s
Generate wheels matrix
Check code style
12s
Check code style
Build source distribution
25s
Build source distribution
Build documentation
4m 25s
Build documentation
Test interface to Muscle 5
1m 5s
Test interface to Muscle 5
Compile the CCD subset for structure.info from the wwPDB CCD
3m 29s
Compile the CCD subset for structure.info from the wwPDB CCD
Run benchmarks
4m 59s
Run benchmarks
Matrix: Build & Test
Upload documentation to GitHub Releases
13s
Upload documentation to GitHub Releases
Upload package to GitHub Releases & PyPI
0s
Upload package to GitHub Releases & PyPI
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16 errors and 2 warnings
Check code style
Process completed with exit code 1.
Run benchmarks
Error: failed to execute the benchmark process
Run benchmarks
Process completed with exit code 1.
Build & Test (cp311-macosx_x86_64, macos-latest)
Command ['arch', '-x86_64', '/bin/sh', '-c', 'pytest /Users/runner/work/biotite/biotite --durations=50 --ignore=/Users/runner/work/biotite/biotite//tests//sequence//align//test_statistics.py --ignore=/Users/runner/work/biotite/biotite//tests//application --ignore=/Users/runner/work/biotite/biotite//tests//database --ignore=/Users/runner/work/biotite/biotite//tests//test_doctest.py --ignore=/Users/runner/work/biotite/biotite//tests//test_modname.py\n'] failed with code 1.
Build & Test (cp311-macosx_x86_64, macos-latest)
Process completed with exit code 1.
Build & Test (cp312-win_amd64, windows-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp313-win_amd64, windows-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp311-win_amd64, windows-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp310-win_amd64, windows-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp310-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp310-macosx_x86_64, macos-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp312-macosx_x86_64, macos-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Build & Test (cp313-macosx_x86_64, macos-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
Compile the CCD subset for structure.info from the wwPDB CCD
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run benchmarks
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Artifacts

Produced during runtime
Name Size
ccd Expired
16.6 MB
documentation Expired
73.5 MB
internal-build Expired
20.1 MB
release-cp310-macosx_arm64 Expired
19.4 MB
release-cp311-macosx_arm64 Expired
19.4 MB
release-cp312-macosx_arm64 Expired
19.4 MB
release-cp313-macosx_arm64 Expired
19.4 MB
release-sdist Expired
16.6 MB