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Improve performance of pdbx.compress() #548

Improve performance of pdbx.compress()

Improve performance of pdbx.compress() #548

Triggered via pull request October 17, 2024 11:33
Status Failure
Total duration 12m 15s
Artifacts 8

test_and_deploy.yml

on: pull_request
Test interfaces to databases and applications
5m 6s
Generate wheels matrix
13s
Check code style
13s
Build source distribution
23s
Build documentation
4m 5s
Test interface to Muscle 5
56s
Compile the CCD subset for structure.info from the wwPDB CCD
3m 31s
Run benchmarks
5m 4s
Matrix: Build & Test
Upload documentation to GitHub Releases
8s
Upload package to GitHub Releases & PyPI
0s

Annotations

13 errors and 2 warnings
Build & Test (cp310-macosx_x86_64, macos-latest)
Command ['arch', '-x86_64', '/bin/sh', '-c', 'pytest /Users/runner/work/biotite/biotite --durations=50 --ignore=/Users/runner/work/biotite/biotite//tests//sequence//align//test_statistics.py --ignore=/Users/runner/work/biotite/biotite//tests//application --ignore=/Users/runner/work/biotite/biotite//tests//database --ignore=/Users/runner/work/biotite/biotite//tests//test_doctest.py --ignore=/Users/runner/work/biotite/biotite//tests//test_modname.py\n'] failed with code 1.
Build & Test (cp310-macosx_x86_64, macos-latest)
Process completed with exit code 1.
Build & Test (cp311-macosx_x86_64, macos-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp311-win_amd64, windows-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp310-win_amd64, windows-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp313-win_amd64, windows-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp312-win_amd64, windows-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp310-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp312-macosx_x86_64, macos-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp313-macosx_x86_64, macos-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp310-macosx_x86_64_macos" failed.
Compile the CCD subset for structure.info from the wwPDB CCD
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run benchmarks
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Artifacts

Produced during runtime
Name Size
ccd Expired
16.6 MB
documentation Expired
73.6 MB
internal-build Expired
20.1 MB
release-cp310-macosx_arm64 Expired
19.4 MB
release-cp311-macosx_arm64 Expired
19.4 MB
release-cp312-macosx_arm64 Expired
19.4 MB
release-cp313-macosx_arm64 Expired
19.4 MB
release-sdist Expired
16.6 MB