refactor GTDB taxonomy parser (#192)

bokulich-lab · Jun 12, 2024 · 3c179ca · 3c179ca
1 parent 4bf4576
commit 3c179ca
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/rescript/get_gtdb.py b/rescript/get_gtdb.py
@@ -96,8 +96,7 @@ def _assemble_queries(version='220.0',
 
 
 def parse_gtdb_taxonomy(tax_str):
-    tax = ' '.join(tax_str.split()[0:2])
-    return tax
+    return tax_str.split("[")[0].strip()
 
 
 def _get_gtdb_data_path(tmpdirname, url, basename):