refactor GTDB taxonomy parser (#192)

bokulich-lab · Jun 20, 2024 · 537a459 · 537a459
1 parent d52d8fa
commit 537a459
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/rescript/get_gtdb.py b/rescript/get_gtdb.py
@@ -84,8 +84,7 @@ def _assemble_queries(version='214.1',
 
 
 def parse_gtdb_taxonomy(tax_str):
-    tax = ' '.join(tax_str.split()[0:2])
-    return tax
+    return tax_str.split("[")[0].strip()
 
 
 def _get_gtdb_data_path(tmpdirname, url, basename):