Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ENH: Adds ability to fetch GTDB v220 to get-gtdb-data #184

Merged
merged 2 commits into from
Jun 5, 2024

Conversation

mikerobeson
Copy link
Collaborator

@mikerobeson mikerobeson commented Apr 25, 2024

Resolves issue #183.

Also includes a refactor of some code... That is, GTDB v220 now hosts the FASTA files as fna.gz, while files for the older versions of the database continue to be hosted as tar.gz.

Copy link
Collaborator

@nbokulich nbokulich left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

thanks @mikerobeson ! Looks good to me. Ignore my inline comment.

The test failures are unrelated to this PR, so I will merge and we can fix those separately.

rescript/get_gtdb.py Show resolved Hide resolved
@nbokulich nbokulich merged commit 14dd23a into bokulich-lab:master Jun 5, 2024
2 of 4 checks passed
@mikerobeson mikerobeson deleted the add-gtdb-v220 branch July 15, 2024 18:52
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants