FIX: Pandas deprecations #284

	name: Test and build

	on:
	pull_request:
	branches:
	- main
	push:

	jobs:
	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2

	- name: set up python 3.8
	uses: actions/setup-python@v1
	with:
	python-version: 3.8

	- name: install dependencies
	run: pip install -q flake8

	- name: lint
	run: flake8

	rust-test:
	runs-on: macos-latest
	steps:
	- uses: actions/checkout@v2
	- uses: actions-rs/toolchain@v1
	with:
	toolchain: stable
	- run: cargo test
	working-directory: ./fastq_writer

	build-and-test:
	needs: [lint, rust-test]
	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v2
	with:
	# necessary for versioneer
	fetch-depth: 0

	- name: Hack - template coverage output path
	run: echo "COV=coverage xml -o $GITHUB_WORKSPACE/coverage.xml" >> $GITHUB_ENV

	- uses: qiime2/action-library-packaging@alpha1
	with:
	package-name: q2-fondue
	additional-tests: ${{ env.COV }}
	build-target: dev
	library-token: ${{ secrets.LIBRARY_TOKEN }}

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v2
	with:
	fail_ci_if_error: true

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