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* FIX: pd concat and update readme * FIX: pd squeeze * revert format changes and fix len * fix lint * readme clear mandatory instructions * remove unused transformer * update installation instructions * update Dockerimage to new version * add Docker image link Co-authored-by: Lina Kim <[email protected]> --------- Co-authored-by: Lina Kim <[email protected]>
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Original file line number | Diff line number | Diff line change |
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@@ -28,7 +28,8 @@ def test_query(self, mock_ids): | |
obs_ids, = fondue.actions.get_ids_from_query( | ||
query, '[email protected]', 1, 'DEBUG' | ||
) | ||
exp_ids = pd.DataFrame(index=pd.Index(['SRR123', 'SRR234'], name='ID')) | ||
exp_ids = pd.DataFrame( | ||
index=pd.Index(['SRR123', 'SRR234'], name='ID'), columns=[], ) | ||
|
||
mock_ids.assert_called_once_with( | ||
'[email protected]', 1, None, query, 'biosample', 'DEBUG' | ||
|
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