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Tests are failing with napari 0.5.0
bug
Something isn't working
#443
opened Jul 11, 2024 by
adamltyson
[Feature] Use a registry file for test data instead of hard-coding paths in New feature or request
conftest.py
enhancement
#439
opened Jun 6, 2024 by
alessandrofelder
Check performance on Windows
enhancement
New feature or request
#426
opened May 28, 2024 by
adamltyson
napari plugin does not allow use of trained weights (without model file)
enhancement
New feature or request
#425
opened May 28, 2024 by
adamltyson
Improve printing & logging
enhancement
New feature or request
#424
opened May 23, 2024 by
adamltyson
Move imports out of functions
enhancement
New feature or request
#423
opened May 23, 2024 by
adamltyson
[BUG] Kernel crashes when running the example
bug
Something isn't working
#415
opened May 7, 2024 by
priya-velu5
Standardise the use of axes in cellfinder
enhancement
New feature or request
#413
opened May 7, 2024 by
adamltyson
[Feature] Benchmark napari versus brainmapper code
enhancement
New feature or request
#391
opened Feb 27, 2024 by
alessandrofelder
[Feature] Refactor so THRESHOLD and SOMA_CENTRE_VALUE are defined in one place
enhancement
New feature or request
#387
opened Feb 16, 2024 by
alessandrofelder
[Feature] Allow the user to select points from more than one layer at once in the curation interface
enhancement
New feature or request
#362
opened Jan 16, 2024 by
adamltyson
Update the sample data
cellfinder-napari
Issue concerns the napari plugin
enhancement
New feature or request
#305
opened Dec 3, 2023 by
adamltyson
Update cell classification network
cellfinder-core
Issue concerns the core backend
enhancement
New feature or request
#267
opened Nov 29, 2023 by
adamltyson
Investigate parameter combinations causing cellfinder to stall
bug
Something isn't working
cellfinder-core
Issue concerns the core backend
#270
opened Oct 12, 2023 by
adamltyson
Add benchmarks for training [Feature]
cellfinder-core
Issue concerns the core backend
enhancement
New feature or request
#274
opened Jul 20, 2023 by
sfmig
[BUG] Something isn't working
cellfinder-core
Issue concerns the core backend
mypy
needs stub file for cellfinder-core
bug
#278
opened Jul 6, 2023 by
willGraham01
Avoid hard-coding of Issue concerns the core backend
~/.brainglobe/cellfinder/models
cellfinder-core
#280
opened Jul 3, 2023 by
alessandrofelder
Error is raised if no cells are detected.
bug
Something isn't working
cellfinder-napari
Issue concerns the napari plugin
#306
opened May 23, 2023 by
adamltyson
Move test data to gin and fetch via Issue concerns the core backend
pooch
cellfinder-core
#282
opened May 11, 2023 by
alessandrofelder
Add appropriate typing or refactor Issue concerns the core backend
enhancement
New feature or request
get_cell_detector
cellfinder-core
#283
opened May 9, 2023 by
alessandrofelder
Add tests for structure splitting code
cellfinder-core
Issue concerns the core backend
enhancement
New feature or request
#285
opened Apr 18, 2023 by
dstansby
Add docs to structure splitting code
cellfinder-core
Issue concerns the core backend
enhancement
New feature or request
#286
opened Apr 18, 2023 by
dstansby
Investigate replacing custom connected-component labelling with 3rd party library
cellfinder-core
Issue concerns the core backend
enhancement
New feature or request
#287
opened Apr 17, 2023 by
dstansby
[Feature] Warn or error if ball_z or ball_xy_size is less than voxel sizes
cellfinder-core
Issue concerns the core backend
enhancement
New feature or request
#288
opened Apr 4, 2023 by
dstansby
[Feature] Add a helper function to get the memory size of one image plane
cellfinder-core
Issue concerns the core backend
enhancement
New feature or request
#289
opened Apr 3, 2023 by
dstansby
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