Skip to content

Conversation

epiercehoffman
Copy link
Collaborator

Updates

After adding the DRAGEN VCF, the array of VCFs passed to PlotSVCountsPerSample in FilterBatchSites was not updated so the Wham SV counts were not getting plotted. This PR updates FilterBatchSites to pass all 6 possible VCFs to PlotSVCountsPerSample.

Testing

  • Validated all WDLs and JSONs
  • Ran FilterBatchSites and confirmed that all expected plots were generated

Notes

  • This PR needs to be merged before the next release
  • The changes to the dockstore.yml need to be reverted before merging

@epiercehoffman epiercehoffman added the bug Something isn't working label Aug 26, 2025
@epiercehoffman epiercehoffman merged commit f8939d8 into main Sep 2, 2025
7 checks passed
@epiercehoffman epiercehoffman deleted the eph_plotsvcounts_6vcfs branch September 2, 2025 18:08
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants