Code

Add v4 CNVs#1176

Code

Closed

elissa-alarmani wants to merge 62 commits intomainbroadinstitute/gnomad-browser:mainfrom ea/cnvsbroadinstitute/gnomad-browser:ea/cnvsCopy head branch name to clipboard

+43,348-1,738

Commits

Commits on Oct 29, 2023

• cnv notebook draft

  elissa-alarmani

  committed
  5e65538

  Copy full SHA for 5e65538

• inital pipelines and task creation

  elissa-alarmani

  committed
  46ad865

  Copy full SHA for 46ad865

• create cnv resolvers

  elissa-alarmani

  committed
  d0103d8

  Copy full SHA for d0103d8

• create cnv queries

  elissa-alarmani

  committed
  0110036

  Copy full SHA for 0110036

• create cnv graphql types

  elissa-alarmani

  committed
  a9adba5

  Copy full SHA for a9adba5

• create cnvs pipeline and tasks

  elissa-alarmani

  committed
  2d3959a

  Copy full SHA for 2d3959a

• add cnv dataset as an enum dataset-id

  elissa-alarmani

  committed
  549d1fe

  Copy full SHA for 549d1fe

• add cnv to gene type

  elissa-alarmani

  committed
  12ad7ad

  Copy full SHA for 12ad7ad

• add cnvs to query type

  elissa-alarmani

  committed
  eef8cfc

  Copy full SHA for eef8cfc

• add cnvs to region type

  elissa-alarmani

  committed
  a1f257a

  Copy full SHA for a1f257a

• add cnv resolvers to schema

  elissa-alarmani

  committed
  72853ba

  Copy full SHA for 72853ba

• update singular and plural naming

  elissa-alarmani

  committed
  282385e

  Copy full SHA for 282385e

• python black formatter

  elissa-alarmani

  committed
  197ab86

  Copy full SHA for 197ab86

• wip resolvers and queries

  elissa-alarmani

  committed
  52dad61

  Copy full SHA for 52dad61

• minor pipeline edits

  elissa-alarmani

  committed
  36dae00

  Copy full SHA for 36dae00

• add CNVDatasetId to Gene, Query, Region types

  elissa-alarmani

  committed
  cfcf644

  Copy full SHA for cfcf644

• fix resolver and query errors

  elissa-alarmani

  committed
  affe4bb

  Copy full SHA for affe4bb

• add cnvs to dataset

  elissa-alarmani

  committed
  526191b

  Copy full SHA for 526191b

• add textOrMissingTextWarning

  elissa-alarmani

  committed
  57a511e

  Copy full SHA for 57a511e

• add gnomad_cnv_r4 to search dataset

  elissa-alarmani

  committed
  634c724

  Copy full SHA for 634c724

• add gnomad_cnv_r4 to metadata

  elissa-alarmani

  committed
  26f85b6

  Copy full SHA for 26f85b6

• create cnv populations table

  elissa-alarmani

  committed
  f8d54b8

  Copy full SHA for f8d54b8

• add cnv page to variant page router

  elissa-alarmani

  committed
  bdd1fa1

  Copy full SHA for bdd1fa1

• WIP cnv page

  elissa-alarmani

  committed
  094ad47

  Copy full SHA for 094ad47

• WIP cnv attribute list

  elissa-alarmani

  committed
  5d72c96

  Copy full SHA for 5d72c96

• add cnv coverage track for percent callable

  elissa-alarmani

  committed
  d3d2e61

  Copy full SHA for d3d2e61

• fix datasetselector oraganization for cnvs

  elissa-alarmani

  committed
  8cef11d

  Copy full SHA for 8cef11d

• add variantfeedback spec tests

  elissa-alarmani

  committed
  66875e4

  Copy full SHA for 66875e4

• create cnv reference list

  elissa-alarmani

  committed
  13fbc27

  Copy full SHA for 13fbc27

• add v4 and cnv v4 to metadata

  elissa-alarmani

  committed
  548e0d4

  Copy full SHA for 548e0d4

• add CNV info to gene page display

  elissa-alarmani

  committed
  4b2a345

  Copy full SHA for 4b2a345

• update cnv pop table labels

  elissa-alarmani

  committed
  390ca74

  Copy full SHA for 390ca74

• WIP variant cnv page

  elissa-alarmani

  committed
  9e89be3

  Copy full SHA for 9e89be3

• create cnv types ts

  elissa-alarmani

  committed
  62139f1

  Copy full SHA for 62139f1

• update attribute list

  elissa-alarmani

  committed
  287f00a

  Copy full SHA for 287f00a

• add filter zoom region for cnvs

  elissa-alarmani

  committed
  c111e15

  Copy full SHA for c111e15

• update graphql types

  elissa-alarmani

  committed
  e618553

  Copy full SHA for e618553

• create tests

  elissa-alarmani

  committed
  abcf5a9

  Copy full SHA for abcf5a9

• create cnv factories

  elissa-alarmani

  committed
  6ccf5e6

  Copy full SHA for 6ccf5e6

• add exome only coverage for cnvs

  elissa-alarmani

  committed
  a091f0d

  Copy full SHA for a091f0d

• add param to only display exome coverage for cnvs

  elissa-alarmani

  committed
  d28db68

  Copy full SHA for d28db68

• add cnv type

  elissa-alarmani

  committed
  eaa2939

  Copy full SHA for eaa2939

• add format prettier

  elissa-alarmani

  committed
  999689d

  Copy full SHA for 999689d

• draft track callable coverage

  elissa-alarmani

  committed
  db258fe

  Copy full SHA for db258fe

• add cnv coverage bin type

  elissa-alarmani

  committed
  9446351

  Copy full SHA for 9446351

• update metadata and sample counts

  elissa-alarmani

  committed
  f2376ea

  Copy full SHA for f2376ea

• add final graphql edits

  elissa-alarmani

  committed
  1092789

  Copy full SHA for 1092789

• fix pipeline edits

  elissa-alarmani

  committed
  9fb2d64

  Copy full SHA for 9fb2d64

• Final Gene and Region Page edits for CNV

  elissa-alarmani

  committed
  fa08958

  Copy full SHA for fa08958

• eslint pass

  elissa-alarmani

  committed
  a603ced

  Copy full SHA for a603ced

• remove inital coverage files

  elissa-alarmani

  committed
  b1fabcd

  Copy full SHA for b1fabcd

• coverage edits

  elissa-alarmani

  committed
  004ba1e

  Copy full SHA for 004ba1e

• Add snapshot test updates

  elissa-alarmani

  committed
  84fea62

  Copy full SHA for 84fea62

• add page changes

  elissa-alarmani

  committed
  4dc9495

  Copy full SHA for 4dc9495

• add formatting

  elissa-alarmani

  committed
  2b16f07

  Copy full SHA for 2b16f07

• update dataset selection

  elissa-alarmani

  committed
  f709675

  Copy full SHA for f709675

• remove console.log

  elissa-alarmani

  committed
  9aa35bc

  Copy full SHA for 9aa35bc

• finalize testing files

  elissa-alarmani

  committed
  407263b

  Copy full SHA for 407263b

• add new vcf file path

  elissa-alarmani

  committed
  aa51e93

  Copy full SHA for aa51e93

• add chromosome to variant table position

  elissa-alarmani

  committed
  6b5a687

  Copy full SHA for 6b5a687

• fix variant table broke search

  elissa-alarmani

  committed
  c4180e2

  Copy full SHA for c4180e2

• eslint fix

  elissa-alarmani

  committed
  dfff177

  Copy full SHA for dfff177