Skip to content

Commit

Permalink
Deploying to gh-pages from @ bbee4a8 🚀
Browse files Browse the repository at this point in the history
  • Loading branch information
tavareshugo committed Jan 23, 2024
0 parents commit 63590a5
Show file tree
Hide file tree
Showing 96 changed files with 71,213 additions and 0 deletions.
Empty file added .nojekyll
Empty file.
698 changes: 698 additions & 0 deletions index.html

Large diffs are not rendered by default.

1,065 changes: 1,065 additions & 0 deletions materials/01-intro/01-surveillance.html

Large diffs are not rendered by default.

1,029 changes: 1,029 additions & 0 deletions materials/01-intro/02-ngs.html

Large diffs are not rendered by default.

635 changes: 635 additions & 0 deletions materials/01-intro/03-workflows.html

Large diffs are not rendered by default.

Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added materials/01-intro/images/artic_protocol.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added materials/01-intro/images/fastqc_quality.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added materials/01-intro/images/gisaid_metadata.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
2,258 changes: 2,258 additions & 0 deletions materials/01-intro/images/igv_overview.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4,282 changes: 4,282 additions & 0 deletions materials/01-intro/images/lineages_example.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
819 changes: 819 additions & 0 deletions materials/01-intro/images/metagenomic_vs_amplicon.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
3,435 changes: 3,435 additions & 0 deletions materials/01-intro/images/multiqc.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
509 changes: 509 additions & 0 deletions materials/01-intro/images/ngs_mapping.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added materials/01-intro/images/virus-RT-qPCR.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
1,141 changes: 1,141 additions & 0 deletions materials/02-isolates/01-consensus.html

Large diffs are not rendered by default.

1,067 changes: 1,067 additions & 0 deletions materials/02-isolates/02-qc.html

Large diffs are not rendered by default.

880 changes: 880 additions & 0 deletions materials/02-isolates/03-lineages.html

Large diffs are not rendered by default.

1,177 changes: 1,177 additions & 0 deletions materials/02-isolates/04-phylogeny.html

Large diffs are not rendered by default.

Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
281 changes: 281 additions & 0 deletions materials/02-isolates/images/igv_amplicon_dropout.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
469 changes: 469 additions & 0 deletions materials/02-isolates/images/igv_deletion_example.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4,282 changes: 4,282 additions & 0 deletions materials/02-isolates/images/lineages_example.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
3,770 changes: 3,770 additions & 0 deletions materials/02-isolates/images/nextclade_deletion_example.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
2,919 changes: 2,919 additions & 0 deletions materials/02-isolates/images/nextclade_overview.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
3,018 changes: 3,018 additions & 0 deletions materials/02-isolates/images/phylogeny_figtree.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
2,141 changes: 2,141 additions & 0 deletions materials/02-isolates/images/switzerland_variants.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
376 changes: 376 additions & 0 deletions materials/02-isolates/images/variants_snps_indels.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4,304 changes: 4,304 additions & 0 deletions materials/02-isolates/images/viralrecon_multiqc_variant_metrics.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
1,341 changes: 1,341 additions & 0 deletions materials/02-isolates/images/viralrecon_workflow_illumina.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
1,286 changes: 1,286 additions & 0 deletions materials/02-isolates/images/viralrecon_workflow_medaka.svg

Large diffs are not rendered by default.

1,721 changes: 1,721 additions & 0 deletions materials/02-isolates/images/workflow_overview.svg

Large diffs are not rendered by default.

1,118 changes: 1,118 additions & 0 deletions materials/03-case_studies/01-switzerland.html

Large diffs are not rendered by default.

1,167 changes: 1,167 additions & 0 deletions materials/03-case_studies/02-southafrica.html

Large diffs are not rendered by default.

1,651 changes: 1,651 additions & 0 deletions materials/03-case_studies/03-eqa.html

Large diffs are not rendered by default.

191 changes: 191 additions & 0 deletions materials/03-case_studies/images/precision_sensitivity.svg
Loading

0 comments on commit 63590a5

Please sign in to comment.