Skip to content

Commit

Permalink
clean up debug code
Browse files Browse the repository at this point in the history
  • Loading branch information
bkmartinjr committed Dec 16, 2023
1 parent e5c3aa0 commit aaa02e7
Showing 1 changed file with 2 additions and 14 deletions.
16 changes: 2 additions & 14 deletions .github/workflows/py-full-unittests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -22,30 +22,18 @@ jobs:
with:
python-version: 3.11

- name: debugging
run: |
pwd
printenv
ls -la
ls -la api/python/cellxgene_census/
git status
git describe
git tag
- name: Install python dependencies (including experimental)
run: |
python -m pip install -U pip setuptools setuptools_scm wheel
# debugging
python -m setuptools_scm -c ./api/python/cellxgene_census/pyproject.toml
pip install --use-pep517 accumulation-tree # Geneformer dependency needs --use-pep517 for Cython
pip install -r ./api/python/cellxgene_census/scripts/requirements-dev.txt
pip install './api/python/cellxgene_census/[experimental]'
- name: Log debugging info
run: |
python -c 'import tiledbsoma; tiledbsoma.show_package_versions()'
pip freeze
- name: Pytest (--expensive --experimental)
run: |
PYTHONPATH=. pytest -v --durations=0 -rP --experimental --expensive ./api/python/cellxgene_census/tests/ -k test_incremental_read_obs
PYTHONPATH=. pytest -v --durations=0 -rP --experimental --expensive ./api/python/cellxgene_census/tests/

0 comments on commit aaa02e7

Please sign in to comment.