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[ci] Allow R acceptance tests to run from a branch #1147

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[ci] Allow R acceptance tests to run from a branch #1147

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9159534
Allow R acceptance tests to run from a branch
ebezzi May 14, 2024
7aeda51
Fix description
ebezzi May 24, 2024
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13 changes: 13 additions & 0 deletions .github/workflows/full-unittests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -36,6 +36,12 @@ on:
required: false
default: ""
type: string
tiledbsoma_r_branch:
# e.g.
description: "Install tiledbsoma from a specific branch"
required: false
default: ""
type: string

jobs:
py_unit_tests:
Expand Down Expand Up @@ -110,6 +116,13 @@ jobs:
extra-packages: any::rcmdcheck, any::remotes
cache: true

- name: install tiledbsoma version override
if: github.event_name == 'workflow_dispatch' && github.event.inputs.tiledbsoma_r_branch != ''
run: |
Rscript -e 'remove.packages(c("tiledb", "tiledbsoma"))'
Rscript -e 'install.packages("remotes")'
Rscript -e 'remotes::install_github("https://github.com/single-cell-data/TileDB-SOMA@${{ github.event.inputs.tiledbsoma_r_branch }}", subdir = "apis/r")'

- name: testthat
run: |
Rscript -e 'remotes::install_local("./api/r/cellxgene.census")'
Expand Down
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