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@compomics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

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  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 170 47

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 49 18

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 39 14

  4. compomics-utilities compomics-utilities Public

    Open source Java library for computational proteomics

    Java 28 16

  5. peptide-shaker peptide-shaker Public

    Interpretation of proteomics identification results

    Java 46 19

  6. searchgui searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    Java 38 16

Repositories

Showing 10 of 91 repositories
  • psm_utils Public

    Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

    compomics/psm_utils’s past year of commit activity
    Python 23 Apache-2.0 5 8 (2 issues need help) 1 Updated Jun 28, 2024
  • IM2Deep Public

    Collisional cross-section prediction for modified peptides

    compomics/IM2Deep’s past year of commit activity
    Python 4 Apache-2.0 0 0 0 Updated Jun 27, 2024
  • lesSDRF Public
    compomics/lesSDRF’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 5 0 0 Updated Jun 26, 2024
  • molexpress Public

    Graph Neural Networks with Keras 3

    compomics/molexpress’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 21, 2024
  • DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    compomics/DeepLC’s past year of commit activity
    Python 49 Apache-2.0 18 0 0 Updated Jun 18, 2024
  • compomics-utilities Public

    Open source Java library for computational proteomics

    compomics/compomics-utilities’s past year of commit activity
    Java 28 16 4 0 Updated Jun 3, 2024
  • ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    compomics/ThermoRawFileParser’s past year of commit activity
    C# 170 Apache-2.0 47 16 0 Updated May 10, 2024
  • ms2pip Public

    MS2PIP: MS2 Peak Intensity Prediction

    compomics/ms2pip’s past year of commit activity
    C 35 Apache-2.0 17 11 2 Updated May 9, 2024
  • searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    compomics/searchgui’s past year of commit activity
    Java 38 16 11 (7 issues need help) 0 Updated May 8, 2024
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    compomics/ms2rescore’s past year of commit activity
    Python 39 Apache-2.0 14 22 2 Updated May 2, 2024
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