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@czbiohub-sf

Chan Zuckerberg Biohub San Francisco

CZ Biohub SF logo

The Chan Zuckerberg Biohub San Francisco is a nonprofit research institute focused on understanding the underlying mechanisms of disease and on developing new technologies that will lead to actionable diagnostics and effective therapies. We are a regional research endeavor with international reach, where the San Francisco Bay Area’s leading academic institutions (Stanford University; University of California, Berkeley; and University California, San Francisco) join forces with CZ Biohub’s innovative internal team to catalyze impact, spurring partnerships that benefit people around the world. The tools and technologies we create will always be freely available to scientists everywhere.

Affiliated GitHub organizations

The following GitHub organizations are also part of CZ Biohub San Francisco's GitHub presence:

Contact us!

We welcome comments, questions, and inquiries. Please use this form to contact us.

Interested in working with us? Search our job openings here.

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  1. noise2self noise2self Public

    A framework for blind denoising with self-supervision.

    Jupyter Notebook 325 68

  2. tabula-muris tabula-muris Public

    Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

    HTML 182 89

  3. xicor xicor Public archive

    xi correlation method adapted for python

    Jupyter Notebook 142 17

  4. tabula-muris-senis tabula-muris-senis Public

    Tabula Muris Senis

    Jupyter Notebook 92 26

  5. tabula-sapiens tabula-sapiens Public

    Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens

    Jupyter Notebook 37 7

  6. zebrahub_analysis zebrahub_analysis Public

    Analysis of single-cell single-embryo RNA seq data from the zebrafish developmental atlas Zebrahub.

    Jupyter Notebook 2 1

Repositories

Showing 10 of 92 repositories
  • shrimPy Public

    shrimPy: Smart High-throughput Robust Imaging & Measurement in Python

    czbiohub-sf/shrimPy’s past year of commit activity
    Python 7 BSD-3-Clause 1 33 11 Updated Jul 2, 2024
  • iohub Public

    Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

    czbiohub-sf/iohub’s past year of commit activity
    Python 26 BSD-3-Clause 5 24 (2 issues need help) 6 Updated Jul 2, 2024
  • czb-ui Public

    CZ Biohub's higher level components made with CZI's Science Design System Component Library.

    czbiohub-sf/czb-ui’s past year of commit activity
    TypeScript 5 BSD-3-Clause 0 0 0 Updated Jul 1, 2024
  • Rapid-QC-MS Public

    Realtime quality control for mass spectrometry data acquisition

    czbiohub-sf/Rapid-QC-MS’s past year of commit activity
    Python 13 2 15 0 Updated Jul 1, 2024
  • zebrahub_analysis Public

    Analysis of single-cell single-embryo RNA seq data from the zebrafish developmental atlas Zebrahub.

    czbiohub-sf/zebrahub_analysis’s past year of commit activity
    Jupyter Notebook 2 1 1 1 Updated Jun 28, 2024
  • yogo Public

    The "you only glance once" object detection model

    czbiohub-sf/yogo’s past year of commit activity
    Python 10 BSD-3-Clause 1 5 5 Updated Jun 27, 2024
  • protoSpaceJAM Public

    CRISPR knock-in design at scale

    czbiohub-sf/protoSpaceJAM’s past year of commit activity
    Python 6 BSD-3-Clause 1 9 0 Updated Jun 27, 2024
  • czbiohub_openxdmod Public Forked from romxero/czbiohub_openxdmod

    This is an openxdmod container for the bruno super computer @ biohub sf

    czbiohub-sf/czbiohub_openxdmod’s past year of commit activity
    Shell 0 1 0 0 Updated Jun 25, 2024
  • protoSpaceJAM-portal Public

    Webserver allowing non-bioinformaticians to easily run protospaceJAM.

    czbiohub-sf/protoSpaceJAM-portal’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 0 0 Updated Jun 23, 2024
  • MIDAS Public

    Metagenomic Intra-Species Diversity Analysis (MIDAS)

    czbiohub-sf/MIDAS’s past year of commit activity
    Python 32 MIT 9 2 0 Updated Jun 20, 2024

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