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31 Open 93 Closed
31 Open 93 Closed
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Issues list

Bump Python maintenance Maintenance work
#258 opened Nov 6, 2024 by ziw-liu
Implement OME-NGFF v0.5 (Zarr v3) enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#257 opened Oct 16, 2024 by ziw-liu
test_combine_fovs_to_hcs fails bug Something isn't working NGFF OME-NGFF (OME-Zarr format)
#255 opened Oct 1, 2024 by ieivanov
create_position fails when inconsistent row/column capitalization is used NGFF OME-NGFF (OME-Zarr format)
#253 opened Sep 30, 2024 by ieivanov
1
2
Position should be a subclass of BaseFOV
#249 opened Sep 26, 2024 by talonchandler
get the zarr dataset size with iohub info verbose enhancement New feature or request good first issue Good for newcomers
#247 opened Sep 26, 2024 by edyoshikun
Multi-version gallery build fails bug Something isn't working CI Continuous integration documentation Improvements or additions to documentation
#239 opened Aug 8, 2024 by ziw-liu
CLI or similar to change the channel names. enhancement New feature or request
#236 opened Aug 5, 2024 by edyoshikun
1
TypeError: ImageArray.__init__() got an unexpected keyword argument 'store' question Further information is requested
#226 opened Jun 29, 2024 by ieivanov
2
TIFF UAPI TODOs documentation Improvements or additions to documentation μManager Micro-Manager files and metadata
#213 opened Mar 4, 2024 by ziw-liu
1 of 2 tasks
0.2.0
Add TIFF examples documentation Improvements or additions to documentation
#212 opened Feb 22, 2024 by ziw-liu 0.2.0
1
CLI to update metadata of zarr stores enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#210 opened Feb 16, 2024 by ieivanov 0.2.0
4
support ome-ngff on s3 enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#209 opened Feb 13, 2024 by d-v-b 0.2.0
5
Add tests for converting OpenCell datasets CI Continuous integration
#199 opened Oct 25, 2023 by ieivanov
better logging enhancement New feature or request
#188 opened Sep 25, 2023 by ieivanov 0.2.0
iohub appending does not change or raise warning regarding datatype NGFF OME-NGFF (OME-Zarr format) question Further information is requested
#187 opened Sep 11, 2023 by edyoshikun
1
iohub rechunk CLI enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#184 opened Sep 1, 2023 by mattersoflight
@ziw-liu
2
Test with a real HCS OME-TIFF dataset CI Continuous integration μManager Micro-Manager files and metadata
#163 opened Jul 24, 2023 by ziw-liu
5
Root path of BaseFOV μManager Micro-Manager files and metadata question Further information is requested
#157 opened Jun 29, 2023 by ziw-liu 0.2.0
1
Save grayscale data and binary masks in the OME-zarr store enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#156 opened Jun 28, 2023 by nbathreya
@ziw-liu
2
Per-frame metadata in UAPI help wanted Extra attention is needed
#155 opened Jun 22, 2023 by ziw-liu 0.2.0
5
Test on NDTIFFv3 datasets CI Continuous integration μManager Micro-Manager files and metadata
#149 opened Jun 20, 2023 by ziw-liu
1
Contrast limit should follow the datatype of the dataset bug Something isn't working good first issue Good for newcomers NGFF OME-NGFF (OME-Zarr format)
#117 opened Apr 19, 2023 by edyoshikun
@edyoshikun
1
Add code coverage check on PRs CI Continuous integration good first issue Good for newcomers meta About how we organize the project
#115 opened Apr 17, 2023 by ziw-liu
Can convert pass the most important information from micromanager image plane metadata? enhancement New feature or request μManager Micro-Manager files and metadata
#103 opened Apr 5, 2023 by talonchandler
8
ProTip! Updated in the last three days: updated:>2024-11-10.