pangenomics

This repo contains various utilities for pangenomic analysis of Bacteria and Archaea.

Name		Name	Last commit message	Last commit date
Multilocus_Phylogenetics		Multilocus_Phylogenetics
dnds		dnds
download_genbank_genomes		download_genbank_genomes
get_orthologs		get_orthologs
pangenomics_SOP		pangenomics_SOP
parsing-scripts		parsing-scripts
phylogenetic_mapping		phylogenetic_mapping
protein_sharing		protein_sharing
4_vog_annotation.py		4_vog_annotation.py
README.md		README.md
calculate_intergenic_spacers.py		calculate_intergenic_spacers.py
coding_density_from_gff.py		coding_density_from_gff.py
get_ARSC.py		get_ARSC.py
get_gc_and_narsc.py		get_gc_and_narsc.py
lastp_aai.py		lastp_aai.py
micropan-source.R		micropan-source.R
ncldv_markersearch.py		ncldv_markersearch.py
pmg_phylogeny.py		pmg_phylogeny.py
rnapfinder_with_hmmer_v2.py		rnapfinder_with_hmmer_v2.py
vog_annotation.py		vog_annotation.py

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