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Flavia Pezzini edited this page Feb 23, 2020
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My notes on running the Yang and Smith 2014 pipeline.
Yang, Y., Smith, S. A. 2014. Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics. Mol. Biol. Evol. 31: 3081–3092.
Following scripts available at: https://bitbucket.org/yangya/phylogenomic_dataset_construction/src/master/