16. Build homolog trees

Have to put a bunch of stuff in the path before.

python fasta_to_tree_pxclsq.py <number_cores> dna/aa bootstrap(y/n)

python fasta_to_tree_pxclsq.py . 16 dna n

python ~/phylogenomic_dataset_construction/scripts/fasta_to_tree_pxclsq.py . 56 dna n

Started March 11th 09:48 and still only 380 scaffolds on April 06th - stuck in cluster5.fa with 960 sequences. Finished the cluster526.fa on March 12th 15:49. Killed and started again (no need to specify only the remaining scaffolds, it understands).