Updating GardenSnake validParams() to a static member function among other things

.vscode/settings.json

@@ -0,0 +1,56 @@
+{
+     "C_Cpp.default.configurationProvider": "ms-vscode.makefile-tools",
+     "files.associations": {
+          "ZoneAux.C": "cpp",
+          "GardensnakeApp.C": "cpp",
+          "FVVacuumBC.C": "cpp",
+          "PenaltyBC.C": "cpp",
+          "FVNeutronDiffusion.C": "cpp",
+          "Absorption.C": "cpp",
+          "Fission.C": "cpp",
+          "Scattering.C": "cpp",
+          "cctype": "cpp",
+          "cmath": "cpp",
+          "cstdarg": "cpp",
+          "cstddef": "cpp",
+          "cstdio": "cpp",
+          "cstdlib": "cpp",
+          "cstring": "cpp",
+          "ctime": "cpp",
+          "cwchar": "cpp",
+          "exceptio": "cpp",
+          "fstream": "cpp",
+          "ios": "cpp",
+          "iostream": "cpp",
+          "istream": "cpp",
+          "iterator": "cpp",
+          "memory": "cpp",
+          "new": "cpp",
+          "ostream": "cpp",
+          "stdexcep": "cpp",
+          "streambu": "cpp",
+          "string": "cpp",
+          "typeinfo": "cpp",
+          "XSMaterial.C": "cpp",
+          "FissionSourceRMSFractionalChange.C": "cpp",
+          "SolutionNormalizer.C": "cpp",
+          "main.C": "cpp",
+          "bcs_Unity.C": "cpp",
+          "auxkernels_Unity.C": "cpp",
+          "array": "cpp",
+          "chrono": "cpp",
+          "compare": "cpp",
+          "functional": "cpp",
+          "ratio": "cpp",
+          "tuple": "cpp",
+          "type_traits": "cpp",
+          "utility": "cpp",
+          "IntegratedFissionRatePostprocessor.C": "cpp",
+          "KEigenvalue.C": "cpp",
+          "PeakFissionSource.C": "cpp",
+          "PostprocessorRelativeChange.C": "cpp",
+          "TotalFluxRMSFractionalChange.C": "cpp",
+          "ZoneElementAverageValue.C": "cpp",
+          "ZoneElementIntegralPostprocessor.C": "cpp"
+     }
+}

Makefile

@@ -1,3 +1,54 @@
+# ###############################################################################
+# ################### MOOSE Application Standard Makefile #######################
+# ###############################################################################
+# #
+# # Optional Environment variables
+# # MOOSE_DIR        - Root directory of the MOOSE project
+# # MODULE_DIR       - Location of the MOOSE modules directory
+# # FRAMEWORK_DIR    - Location of the MOOSE framework
+# #
+# ###############################################################################
+# # Use the MOOSE submodule if it exists and MOOSE_DIR is not set
+# ###############################################################################
+# MODULE_DIR         ?= $(shell dirname `pwd`)
+# MOOSE_DIR          ?= $(shell dirname $(MODULE_DIR))
+# FRAMEWORK_DIR      ?= $(MOOSE_DIR)/framework
+# ADDITIONAL_CPPFLAGS += -Wall -Wextra
+# ###############################################################################
+# # framework
+# include $(FRAMEWORK_DIR)/build.mk
+# include $(FRAMEWORK_DIR)/moose.mk
+
+# # Module
+# MODULE_NAME := gardensnake
+# include $(MODULE_DIR)/modules.mk
+
+# # MOOSE_SUBMODULE    := $(CURDIR)/moose
+# # ifneq ($(wildcard $(MOOSE_SUBMODULE)/framework/Makefile),)
+# #   MOOSE_DIR        ?= $(MOOSE_SUBMODULE)
+# # else
+# #   MOOSE_DIR        ?= $(shell dirname `pwd`)/moose
+# # endif
+
+# # # framework
+# # FRAMEWORK_DIR      := $(MOOSE_DIR)/framework
+# # include $(FRAMEWORK_DIR)/build.mk
+# # include $(FRAMEWORK_DIR)/moose.mk
+
+# # ################################## MODULES ####################################
+# # ALL_MODULES := no
+# # include $(MOOSE_DIR)/modules/modules.mk
+# ###############################################################################
+
+# # dep apps
+# APPLICATION_DIR    := $(MODULE_DIR)/gardensnake
+# APPLICATION_NAME   := gardensnake
+# BUILD_EXEC         := yes
+# DEP_APPS           := $(shell $(FRAMEWORK_DIR)/scripts/find_dep_apps.py $(APPLICATION_NAME))
+# include            $(FRAMEWORK_DIR)/app.mk
+
+# ###############################################################################
+# # Additional special case targets should be added here
 ###############################################################################
 ################### MOOSE Application Standard Makefile #######################
 ###############################################################################
@@ -20,7 +71,7 @@ include $(FRAMEWORK_DIR)/build.mk
 include $(FRAMEWORK_DIR)/moose.mk
 
 ################################## MODULES ####################################
-ALL_MODULES := no
+ALL_MODULES := yes
 include $(MOOSE_DIR)/modules/modules.mk
 ###############################################################################
 
@@ -32,4 +83,4 @@ DEP_APPS           := $(shell $(FRAMEWORK_DIR)/scripts/find_dep_apps.py $(APPLIC
 include            $(FRAMEWORK_DIR)/app.mk
 
 ###############################################################################
-# Additional special case targets should be added here
+# Additional special case targets should be added here

README.md

@@ -2,3 +2,11 @@ Gardensnake
 =====
 
 Simple neutron diffusion solver.
+
+To install, put the gardensnake module inside the modules directory. Then compile by using make.
+
+To test, assuming you compiled an optimized executable, run the follwoing inside the gardensnake drietory after successful compilation:
+
+**./gardensnake-opt -i problems/problem1/problem1.i**
+
+You can test different problems inside the problems directory.

build/header_symlinks/Absorption.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/kernels/Absorption.h

build/header_symlinks/FVNeutronDiffusion.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/dgkernels/FVNeutronDiffusion.h

build/header_symlinks/FVVacuumBC.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/bcs/FVVacuumBC.h

build/header_symlinks/Fission.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/kernels/Fission.h

build/header_symlinks/FissionSourceRMSFractionalChange.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/postprocessors/FissionSourceRMSFractionalChange.h

build/header_symlinks/GardensnakeApp.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/base/GardensnakeApp.h

build/header_symlinks/GardensnakeRevision.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/base/GardensnakeRevision.h

build/header_symlinks/IntegratedFissionRatePostprocessor.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/postprocessors/IntegratedFissionRatePostprocessor.h

build/header_symlinks/KEigenvalue.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/postprocessors/KEigenvalue.h

build/header_symlinks/PeakFissionSource.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/postprocessors/PeakFissionSource.h

build/header_symlinks/PenaltyBC.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/bcs/PenaltyBC.h

build/header_symlinks/PostprocessorRelativeChange.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/postprocessors/PostprocessorRelativeChange.h

build/header_symlinks/Scattering.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/kernels/Scattering.h

build/header_symlinks/SolutionNormalizer.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/userobjects/SolutionNormalizer.h

build/header_symlinks/TotalFluxRMSFractionalChange.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/postprocessors/TotalFluxRMSFractionalChange.h

build/header_symlinks/XSMaterial.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/materials/XSMaterial.h

build/header_symlinks/ZoneAux.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/auxkernels/ZoneAux.h

build/header_symlinks/ZoneElementAverageValue.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/postprocessors/ZoneElementAverageValue.h

build/header_symlinks/ZoneElementIntegralPostprocessor.h

@@ -0,0 +1 @@
+/home/ramzy/projects/gardensnake/include/postprocessors/ZoneElementIntegralPostprocessor.h

build/unity_src/auxkernels_Unity.C

@@ -0,0 +1,2 @@
+
+#include"/home/ramzy/projects/gardensnake/src/auxkernels/ZoneAux.C"

build/unity_src/bcs_Unity.C

@@ -0,0 +1,3 @@
+
+#include"/home/ramzy/projects/gardensnake/src/bcs/FVVacuumBC.C"
+#include"/home/ramzy/projects/gardensnake/src/bcs/PenaltyBC.C"

build/unity_src/dgkernels_Unity.C

@@ -0,0 +1,2 @@
+
+#include"/home/ramzy/projects/gardensnake/src/dgkernels/FVNeutronDiffusion.C"

build/unity_src/kernels_Unity.C

@@ -0,0 +1,4 @@
+
+#include"/home/ramzy/projects/gardensnake/src/kernels/Absorption.C"
+#include"/home/ramzy/projects/gardensnake/src/kernels/Fission.C"
+#include"/home/ramzy/projects/gardensnake/src/kernels/Scattering.C"

build/unity_src/materials_Unity.C

@@ -0,0 +1,2 @@
+
+#include"/home/ramzy/projects/gardensnake/src/materials/XSMaterial.C"

build/unity_src/postprocessors_Unity.C

@@ -0,0 +1,9 @@
+
+#include"/home/ramzy/projects/gardensnake/src/postprocessors/FissionSourceRMSFractionalChange.C"
+#include"/home/ramzy/projects/gardensnake/src/postprocessors/IntegratedFissionRatePostprocessor.C"
+#include"/home/ramzy/projects/gardensnake/src/postprocessors/KEigenvalue.C"
+#include"/home/ramzy/projects/gardensnake/src/postprocessors/PeakFissionSource.C"
+#include"/home/ramzy/projects/gardensnake/src/postprocessors/PostprocessorRelativeChange.C"
+#include"/home/ramzy/projects/gardensnake/src/postprocessors/TotalFluxRMSFractionalChange.C"
+#include"/home/ramzy/projects/gardensnake/src/postprocessors/ZoneElementAverageValue.C"
+#include"/home/ramzy/projects/gardensnake/src/postprocessors/ZoneElementIntegralPostprocessor.C"

build/unity_src/userobjects_Unity.C

@@ -0,0 +1,2 @@
+
+#include"/home/ramzy/projects/gardensnake/src/userobjects/SolutionNormalizer.C"

include/auxkernels/ZoneAux.h

@@ -11,33 +11,34 @@
 /*                                                              */
 /*            See COPYRIGHT for full restrictions               */
 /****************************************************************/
+#pragma once
 
-#ifndef ZONEAUX_H
-#define ZONEAUX_H
+// #ifndef ZONEAUX_H
+// #define ZONEAUX_H
 
 #include "AuxKernel.h"
 
+// Forward Declarations
+// class ZoneAux;
 
-//Forward Declarations
-class ZoneAux;
-
-template<>
-InputParameters validParams<ZoneAux>();
+// template <>
+// InputParameters validParams<ZoneAux>();
 
 /**
  * Constant auxiliary value
  */
 class ZoneAux : public AuxKernel
 {
 public:
+  static InputParameters validParams();
 
   /**
    * Factory constructor, takes parameters so that all derived classes can be built using the same
    * constructor.
    */
   ZoneAux(const InputParameters & parameters);
 
-  virtual ~ZoneAux() {}
+//   virtual ~ZoneAux() {}
 
 protected:
   virtual Real computeValue();
@@ -49,4 +50,4 @@ class ZoneAux : public AuxKernel
   const std::vector<Real> & _zone_numbers;
 };
 
-#endif //ZONEAUX_H
+// #endif // ZONEAUX_H

include/base/GardensnakeApp.h

@@ -1,22 +1,27 @@
-#ifndef GARDENSNAKEAPP_H
-#define GARDENSNAKEAPP_H
+//* This file is part of GardenSnake, an open-source
+//* application for the simulation of plasmas
+//* https://github.com/friedmud/gardensnake
+//*
+//* GardenSnake is powered by the MOOSE Framework
+//* https://www.mooseframework.org
+//*
+//* Licensed under LGPL 2.1, please see LICENSE for details
+//* https://www.gnu.org/licenses/lgpl-2.1.html
 
-#include "MooseApp.h"
-
-class GardensnakeApp;
+#pragma once
 
-template<>
-InputParameters validParams<GardensnakeApp>();
+#include "MooseApp.h"
 
 class GardensnakeApp : public MooseApp
 {
 public:
+  static InputParameters validParams();
+
   GardensnakeApp(InputParameters parameters);
+
   virtual ~GardensnakeApp();
 
   static void registerApps();
-  static void registerObjects(Factory & factory);
-  static void associateSyntax(Syntax & syntax, ActionFactory & action_factory);
-};
+  static void registerAll(Factory & f, ActionFactory & af, Syntax & s);
 
-#endif /* GARDENSNAKEAPP_H */
+};

include/base/GardensnakeRevision.h

@@ -0,0 +1,7 @@
+/* THIS FILE IS AUTOGENERATED - DO NOT EDIT */
+
+#pragma once
+
+#define GARDENSNAKE_REVISION "git commit 9f0b7b9 on 2023-07-15"
+#define GARDENSNAKE_VERSION "9f0b7b9"
+#define GARDENSNAKE_INSTALLABLE_DIRS "tests"

include/bcs/FVVacuumBC.h

@@ -11,25 +11,23 @@
 /*                                                              */
 /*            See COPYRIGHT for full restrictions               */
 /****************************************************************/
+#pragma once
 
-#ifndef FVVACUUMBC_H
-#define FVVACUUMBC_H
+// #ifndef FVVACUUMBC_H
+// #define FVVACUUMBC_H
 
 #include "IntegratedBC.h"
 
-
-//Forward Declarations
-class FVVacuumBC;
-
-template<>
-InputParameters validParams<FVVacuumBC>();
+// Forward Declarations
+// class FVVacuumBC;
 
 /**
  * Applies a DirichletBC using integral(penalty*(u - value))
  */
 class FVVacuumBC : public IntegratedBC
 {
 public:
+  static InputParameters validParams();
 
   FVVacuumBC(const InputParameters & parameters);
 
@@ -39,7 +37,7 @@ class FVVacuumBC : public IntegratedBC
 
   const unsigned int _group;
 
-  const MaterialProperty<std::vector<Real> > & _diffusivity;
+  const MaterialProperty<std::vector<Real>> & _diffusivity;
 };
 
-#endif //FVVACUUMBC_H
+// #endif // FVVACUUMBC_H