exchange manual assertions with snapshot

for "Should output all regenie lines"
genepi · Dec 15, 2023 · 0d5b012 · 0d5b012
1 parent b29eb84
commit 0d5b012
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Showing 2 changed files with 29 additions and 18 deletions.
diff --git a/tests/modules/local/filter_results.nf.test b/tests/modules/local/filter_results.nf.test
@@ -39,25 +39,9 @@ nextflow_process {
 
                 then {
                     assert process.success
-
-                    with(process.out) {
-
-                        with(results_filtered){
-
-                        assert (size() == 2)
-
-                        def lines = path(get(0).get(1)).readLinesGzip()
-
-                        //check if regenie header is as expected
-                assert lines.get(0).equals("CHROM\tGENPOS\tID\tALLELE0\tALLELE1\tA1FREQ\tINFO\tN\tTEST\tBETA\tSE\tCHISQ\tLOG10P\tEXTRA")
-
-                        //all lines included since filter value is 0
-                        assert (lines.size() == 1001)
-                        }
-
-                        }
-                    }
+                    assert snapshot(process.out).match()
 
                 }
 
         }
+}
diff --git a/tests/modules/local/filter_results.nf.test.snap b/tests/modules/local/filter_results.nf.test.snap
@@ -1,4 +1,31 @@
 {
+    "Should output all regenie lines": {
+        "content": [
+            {
+                "0": [
+                    [
+                        "Y1",
+                        "Y1.regenie.filtered.gz:md5,d637f770b60b67e3fe3a5454dadc143b"
+                    ],
+                    [
+                        "Y2",
+                        "Y2.regenie.filtered.gz:md5,6febee3426eaca4ca8b72540ba75e633"
+                    ]
+                ],
+                "results_filtered": [
+                    [
+                        "Y1",
+                        "Y1.regenie.filtered.gz:md5,d637f770b60b67e3fe3a5454dadc143b"
+                    ],
+                    [
+                        "Y2",
+                        "Y2.regenie.filtered.gz:md5,6febee3426eaca4ca8b72540ba75e633"
+                    ]
+                ]
+            }
+        ],
+        "timestamp": "2023-12-15T10:30:54.852916"
+    },
     "Should output only 117 filtered lines": {
         "content": [
             {