Added test with high threshold

writes empty output file
genepi · Dec 15, 2023 · 55572eb · 55572eb
1 parent 0d5b012
commit 55572eb
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diff --git a/tests/modules/local/filter_results.nf.test b/tests/modules/local/filter_results.nf.test
@@ -44,4 +44,30 @@ nextflow_process {
                 }
 
         }
+
+        test("Should output an empty file") {
+
+                when {
+                    params {
+                        annotation_min_log10p = 100
+                    }
+                    process {
+                        """
+                        input[0] = Channel.of( ['Y1', "$baseDir/tests/input/filter_results/regenie_step2_example_Y1.regenie.gz"], ['Y2', "$baseDir/tests/input/filter_results/regenie_step2_example_Y2.regenie.gz"])
+                        """
+                    }
+                }
+
+                then {
+                    assert process.success
+                    assert snapshot(process.out).match()
+                    with(process.out){
+                        with(results_filtered){
+                            def lines = path(get(0).get(1)).readLinesGzip()
+                            assert (lines.size() == 0)
+                        }
+                    }
+                }
+
+        }
 }
diff --git a/tests/modules/local/filter_results.nf.test.snap b/tests/modules/local/filter_results.nf.test.snap
@@ -52,5 +52,32 @@
             }
         ],
         "timestamp": "2023-12-15T10:16:52.606586"
+    },
+    "Should output an empty file": {
+        "content": [
+            {
+                "0": [
+                    [
+                        "Y1",
+                        "Y1.regenie.filtered.gz:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ],
+                    [
+                        "Y2",
+                        "Y2.regenie.filtered.gz:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "results_filtered": [
+                    [
+                        "Y1",
+                        "Y1.regenie.filtered.gz:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ],
+                    [
+                        "Y2",
+                        "Y2.regenie.filtered.gz:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ]
+            }
+        ],
+        "timestamp": "2023-12-15T10:37:15.316506"
     }
 }