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Add script to do exploratory data analysis on TCGA data #17

Merged
merged 12 commits into from
Aug 27, 2020
Merged

Add script to do exploratory data analysis on TCGA data #17

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fe05eea
add notebook to do some exploratory data analysis
jjc2718 Aug 12, 2020
2e34084
Merge branch 'classify_refactor' into explore_filters
jjc2718 Aug 25, 2020
9d7bffe
better phrasing/documentation for things
jjc2718 Aug 25, 2020
693ccfd
Merge branch 'master' into explore_filters
jjc2718 Aug 25, 2020
ba659f7
plot mutation proportions vs. number of mutations in TCGA top 50
jjc2718 Aug 25, 2020
6411f6a
add better documentation to script for exploring data
jjc2718 Aug 25, 2020
c1b0fb2
add PCA of most common cancer types to EDA script
jjc2718 Aug 26, 2020
f8bbd19
subset genes by MAD and take PCA, much more stable (unsurprisingly)
jjc2718 Aug 26, 2020
08d7c97
clean up EDA script and add some documentation
jjc2718 Aug 26, 2020
89bf89f
small phrasing change
jjc2718 Aug 26, 2020
a5d6954
rename filtered dataframe and add some additional clarification
jjc2718 Aug 27, 2020
8ae9ff4
rerun notebook to get rid of error
jjc2718 Aug 27, 2020
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