Releases: hasindu2008/squigulator
Releases · hasindu2008/squigulator
squigulator-v0.3.0
Newly added features and major updates in this version compared to previous v0.2.1 are:
- added support for the new RNA004 chemistry
- dna-r10- profiles now generate 5KHz data to match with latest updates to ONT chemistry
--trans-trunc
option for simulating truncated transcript lengths in RNA simulation--trans-count
option for simulating transcript abundance in RNA simulation--cdna
option for simulation cDNA data- two new developer options
--median-before-mean
and--median-before-std
Documentation newly added:
- parameter profiles: https://hasindu2008.github.io/squigulator/docs/profile.html
Bug fixes:
--dwell-mean
option was mistakenly erroring out which is now fixed
Internal code changes not affecting the user:
- code restructure
- make file updates
- more test cases
- update slow5lib
squigulator-v0.2.2
Changes from v0.2.1 are:
- fix bug where the option for sample rate was not effective
- update readme
squigulator-v0.2.1
Minor bug fix
- c7a1e49: fix a bug that affected the si tag in sam output
squigulator-v0.2.0
New highlights v0.1.0 are:
- support for R10 data (-x dna-r10-min and dna-r10-prom profiles)
- ability to output the signal to read/reference annotation in PAF and SAM formats (-a, -c and --paf-ref options, see output description page), that can be visualised with squigualiser
- More command line fine-tuning parameters (e.g., --amp-noise, --digitisation etc, see man page)
- New options such as -f for specifying fold coverage and --bps for translocation speed (see man page)
squigulator-v0.1.0
- the very first release