Refactor for SCING

.gitignore

@@ -1 +1 @@
-
+*.log

README.md

@@ -2,6 +2,22 @@
 
 Dockerized pigz, a parallel implementation of gzip for modern multi-processor, multi-core machines
 
+## How to Run
+
 ```bash
 docker run -it --rm pigz:2.4
 ```
+
+## Build Container Image
+
+```bash
+./build.sh
+```
+
+## Push to Docker Registry
+
+Either you can use the `docker push` command or run `push.sh` (requires [scing](https://github.com/hisplan/scing)):
+
+```bash
+./push.sh
+```

build.sh

@@ -1,5 +1,15 @@
-#!/bin/bash
+#!/bin/bash -e
 
 source config.sh
 
 docker build -t ${image_name}:${version} .
+
+# hack: comment the ENTRYPOINT and CMD lines to make it work for cromwell
+# this will generate `Dockerfile.cromwell` and build it under the name `cromwell-${image_name}:${version}`
+# https://github.com/broadinstitute/cromwell/issues/2461
+cat Dockerfile \
+    | sed 's/^ENTRYPOINT \[/# ENTRYPOINT \[/g' \
+    | sed 's/^CMD \[/# CMD \[/g' > Dockerfile.cromwell
+
+# build it
+docker build -t cromwell-${image_name}:${version} -f Dockerfile.cromwell .

config.sh

@@ -1,9 +1,5 @@
 version="2.4"
 
 # docker related
-registry="583643567512.dkr.ecr.us-east-1.amazonaws.com"
+registry="quay.io/hisplan"
 image_name="pigz"
-
-# set this to 1 if you want to create a repository in AWS ECR
-# set this to 0 for Docker Hub
-create_ecr_repo=1

push.sh

@@ -0,0 +1,8 @@
+#!/bin/bash -e
+
+source config.sh
+
+echo "${registry}/${image_name}:${version}"
+
+scing push --image=${registry}/${image_name}:${version}
+scing push --image=${registry}/cromwell-${image_name}:${version}