Update crosswalk logic

hubmapconsortium · Jun 4, 2024 · ad7ba27 · ad7ba27
1 parent 0957d2b
commit ad7ba27
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/update-collection.js b/src/update-collection.js
@@ -23,7 +23,7 @@ export async function updateCollection(context) {
   const refOrgans = updated.filter((d) => d !== refOrganCrosswalk && d.startsWith('ref-organ/'));
 
   for (const refOrgan of refOrgans) {
-    console.log(`Updating crosswalk for ${refOrgan}`);
+    console.log(`Updating crosswalk for ${refOrgan} using ${refOrganCrosswalk}`);
     await updateRefOrganCrosswalk({
       ...context,
       selectedDigitalObject: getDigitalObjectInformation(resolve(context.doHome, refOrgan), context.purlIri),

diff --git a/src/update-ref-organ-crosswalk.js b/src/update-ref-organ-crosswalk.js
@@ -20,14 +20,14 @@ export async function updateRefOrganCrosswalk(context) {
 function subsetCrosswalk(crosswalkRows, gltf) {
   const results = [];
   for (const node of gltf.nodes) {
-    const row = crosswalkRows.find((n) => (n.node_name = node.name));
+    const row = crosswalkRows.find((n) => (n.node_name === node.name));
     if (row) {
       results.push({
         node_name: node.name,
         OntologyID: row.OntologyID,
         label: row.label,
       });
-    } else if (node.extras?.ontologyid) {
+    } else if (node.extras?.ontologyid && node.extras.ontologyid !== '-') {
       results.push({
         node_name: node.name,
         OntologyID: node.extras.ontologyid,