Add rdfs:label to provisional terms

This change allows the rdfs:label to be provided upfront, rather than being added during the enrichment process where labels come from a reference ontology.

If a concept is already known, enriching it by its identifier by its source ontology gives us all its details, including the official name. But for temporary or provisional concepts, we use  ccf_pref_label to store its given name, and the official label is not assigned yet. This update changes that by allowing users to add the label directly in the normalized form.

schemas/src/digital-objects/asct-b.yaml

@@ -19,7 +19,6 @@ default_range: string
 
 imports:
   - linkml:types
-  - ../shared/entity-base
   - ../shared/metadata-base
 
 settings:
@@ -37,6 +36,7 @@ classes:
     abstract: true
     slots:
       - id
+      - label
       - conforms_to
       - parent_class
       - ccf_pref_label
@@ -257,6 +257,15 @@ slots:
     required: false
     range: CharacterizingMarkerSet
     multivalued: true
+  id:
+    required: true
+    range: uriorcurie
+    identifier: true
+  label:
+    required: false
+    slot_uri: rdfs:label
+    annotations:
+      owl: AnnotationProperty, AnnotationAssertion   
   ccf_pref_label:
     required: true
     slot_uri: ccf:ccf_pref_label

src/normalization/normalize-asct-b.js

@@ -107,6 +107,7 @@ function normalizeAs(collector, { id: as_id, name: as_name, is_provisional }, in
     };
     if (is_provisional) {
       obj['parent_class'] = 'ccf:AnatomicalStructure';
+      obj['label'] = as_name.trim();
     }
     collector.push(obj);
   }
@@ -188,6 +189,7 @@ function normalizeCt(collector, { id: ct_id, name: ct_name, is_provisional }, in
     };
     if (is_provisional) {
       obj['parent_class'] = 'ccf:CellType';
+      obj['label'] = ct_name.trim();
     }
     collector.push(obj);
   }
@@ -255,6 +257,7 @@ function normalizeBm(collector, { id: bm_id, name: bm_name, b_type, is_provision
     };
     if (is_provisional) {
       obj['parent_class'] = 'ccf:Biomarker';
+      obj['label'] = bm_name.trim();
     }
     collector.push(obj);
   }