renormalize kpmp set with age brackets

hubmapconsortium · Feb 13, 2024 · 22fc529 · 22fc529
1 parent 2c9a793
commit 22fc529
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Showing 8 changed files with 211 additions and 211 deletions.
diff --git a/staging/kpmp-kidney-eadon-2023/registrations.yaml b/staging/kpmp-kidney-eadon-2023/registrations.yaml
@@ -26,7 +26,7 @@
       - rui_location: female_cortex.json
     # - id: 21-020
       # sex: .nan
-      label: 70-79 Years
+      # label: 70-79 Years
       #samples:
       # - rui_location: female_cortex.json
     - id: 21-019
@@ -66,7 +66,7 @@
       - rui_location: female_cortex.json
     - id: K1800128P-3
       sex: Male
-      label: .nan
+      # label: .nan
       samples:
       - rui_location: male_cortex.json
     - id: s1815183
@@ -81,7 +81,7 @@
       - rui_location: male_cortex.json
     - id: K1700326-6
       sex: Female
-      label: .nan
+      # label: .nan
       samples:
       - rui_location: female_cortex.json
     - id: K2100035_1_D1
@@ -91,7 +91,7 @@
       - rui_location: male_cortex.json
     # - id: 21-021
       # sex: .nan
-      label: .nan
+      # label: .nan
       # samples:
       # - rui_location: female_cortex.json
     - id: IU1800006
@@ -106,7 +106,7 @@
       - rui_location: male_cortex.json
     # - id: K1700415-2
       # sex: Female
-      label: .nan
+      # label: .nan
       # samples:
       # - rui_location: female_cortex.json
     - id: 18-142
@@ -121,8 +121,8 @@
       - rui_location: male_cortex.json
     # - id: 21-016
       # sex: .nan
-      label: 50-59 Years
-      #samples:
+      # label: 50-59 Years
+      # samples:
       # - rui_location: female_cortex.json
     - id: IU1700002
       sex: Female

diff --git a/staging/kpmp-kidney-eadon-2023/rui_locations.jsonld b/staging/kpmp-kidney-eadon-2023/rui_locations.jsonld
@@ -4,7 +4,7 @@
     {
       "@id": "32-10074",
       "@type": "Donor",
-      "label": "Male",
+      "label": "70-79 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -65,7 +65,7 @@
     {
       "@id": "20-688",
       "@type": "Donor",
-      "label": "Male",
+      "label": "60-69 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -126,7 +126,7 @@
     {
       "@id": "30-11084",
       "@type": "Donor",
-      "label": "Female",
+      "label": "50-59 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -187,7 +187,7 @@
     {
       "@id": "21-019",
       "@type": "Donor",
-      "label": "Male",
+      "label": "50-59 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -248,7 +248,7 @@
     {
       "@id": "17-1606",
       "@type": "Donor",
-      "label": "Female",
+      "label": "50-59 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -309,7 +309,7 @@
     {
       "@id": "18-162",
       "@type": "Donor",
-      "label": "Female",
+      "label": "60-69 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -370,7 +370,7 @@
     {
       "@id": "18-139",
       "@type": "Donor",
-      "label": "Male",
+      "label": "60-69 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -431,7 +431,7 @@
     {
       "@id": "21-015",
       "@type": "Donor",
-      "label": "Female",
+      "label": "50-59 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -492,7 +492,7 @@
     {
       "@id": "18-312",
       "@type": "Donor",
-      "label": "Male",
+      "label": "70-79 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -553,7 +553,7 @@
     {
       "@id": "K2000201_D1",
       "@type": "Donor",
-      "label": "Female",
+      "label": "50-59 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -675,7 +675,7 @@
     {
       "@id": "s1815183",
       "@type": "Donor",
-      "label": "Female",
+      "label": "20-29 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -736,7 +736,7 @@
     {
       "@id": "20-687",
       "@type": "Donor",
-      "label": "Male",
+      "label": "70-79 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -858,7 +858,7 @@
     {
       "@id": "K2100035_1_D1",
       "@type": "Donor",
-      "label": "Male",
+      "label": "60-69 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -919,7 +919,7 @@
     {
       "@id": "IU1800006",
       "@type": "Donor",
-      "label": "Female",
+      "label": "50-59 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -980,7 +980,7 @@
     {
       "@id": "27-10166",
       "@type": "Donor",
-      "label": "Male",
+      "label": "40-49 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -1041,7 +1041,7 @@
     {
       "@id": "18-142",
       "@type": "Donor",
-      "label": "Female",
+      "label": "60-69 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -1102,7 +1102,7 @@
     {
       "@id": "K1900069_1D6",
       "@type": "Donor",
-      "label": "Male",
+      "label": "50-59 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -1163,7 +1163,7 @@
     {
       "@id": "IU1700002",
       "@type": "Donor",
-      "label": "Female",
+      "label": "30-39 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -1224,7 +1224,7 @@
     {
       "@id": "164-14",
       "@type": "Donor",
-      "label": "Male",
+      "label": "40-49 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -1285,7 +1285,7 @@
     {
       "@id": "28-12558",
       "@type": "Donor",
-      "label": "Female",
+      "label": "60-69 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -1346,7 +1346,7 @@
     {
       "@id": "27-10066",
       "@type": "Donor",
-      "label": "Female",
+      "label": "50-59 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",
@@ -1407,7 +1407,7 @@
     {
       "@id": "IU1700001",
       "@type": "Donor",
-      "label": "Female",
+      "label": "40-49 Years",
       "description": "Entered 7/23/2023, Matthias Kretzler, KPMP",
       "link": "https://doi.org/10.48698/HHE6-YV15",
       "consortium_name": "KPMP",