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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,151 +1,153 @@ | ||
| absl-py==2.1.0 | ||
| aiohttp==3.9.3 | ||
| aiohappyeyeballs==2.4.0 | ||
| aiohttp==3.10.5 | ||
| aiosignal==1.3.1 | ||
| anndata==0.10.6 | ||
| anndata==0.10.9 | ||
| annoy==1.17.3 | ||
| array_api_compat==1.5.1 | ||
| array_api_compat==1.8 | ||
| astunparse==1.6.3 | ||
| attrs==23.2.0 | ||
| attrs==24.2.0 | ||
| bbknn==1.6.0 | ||
| beautifulsoup4==4.12.3 | ||
| celltypist==1.6.2 | ||
| certifi==2024.2.2 | ||
| celltypist==1.6.3 | ||
| certifi==2024.8.30 | ||
| charset-normalizer==3.3.2 | ||
| chex==0.1.86 | ||
| click==8.1.7 | ||
| contextlib2==21.6.0 | ||
| contourpy==1.2.0 | ||
| contourpy==1.3.0 | ||
| cycler==0.12.1 | ||
| Cython==3.0.9 | ||
| Cython==3.0.11 | ||
| docrep==0.3.2 | ||
| et-xmlfile==1.1.0 | ||
| etils==1.8.0 | ||
| etils==1.9.4 | ||
| fbpca==1.0 | ||
| filelock==3.13.3 | ||
| filelock==3.15.4 | ||
| flatbuffers==24.3.25 | ||
| flax==0.8.2 | ||
| fonttools==4.50.0 | ||
| flax==0.9.0 | ||
| fonttools==4.53.1 | ||
| frozenlist==1.4.1 | ||
| fsspec==2024.3.1 | ||
| gast==0.5.4 | ||
| gdown==5.1.0 | ||
| fsspec==2024.9.0 | ||
| gast==0.6.0 | ||
| gdown==5.2.0 | ||
| geosketch==1.2 | ||
| google-pasta==0.2.0 | ||
| grpcio==1.62.1 | ||
| h5py==3.10.0 | ||
| grpcio==1.66.1 | ||
| h5py==3.11.0 | ||
| harmony-pytorch==0.1.8 | ||
| huggingface-hub==0.22.1 | ||
| idna==3.6 | ||
| igraph==0.11.4 | ||
| importlib_resources==6.4.0 | ||
| huggingface-hub==0.24.6 | ||
| humanize==4.10.0 | ||
| idna==3.8 | ||
| igraph==0.11.6 | ||
| importlib_resources==6.4.4 | ||
| intervaltree==3.1.0 | ||
| jax==0.4.25 | ||
| jaxlib==0.4.25 | ||
| Jinja2==3.1.3 | ||
| joblib==1.3.2 | ||
| keras==3.1.1 | ||
| kiwisolver==1.4.5 | ||
| jax==0.4.31 | ||
| jaxlib==0.4.31 | ||
| Jinja2==3.1.4 | ||
| joblib==1.4.2 | ||
| keras==3.5.0 | ||
| kiwisolver==1.4.7 | ||
| legacy-api-wrap==1.4 | ||
| leidenalg==0.10.2 | ||
| libclang==18.1.1 | ||
| lightning==2.1.4 | ||
| lightning-utilities==0.11.1 | ||
| llvmlite==0.42.0 | ||
| Markdown==3.6 | ||
| lightning-utilities==0.11.7 | ||
| llvmlite==0.43.0 | ||
| Markdown==3.7 | ||
| markdown-it-py==3.0.0 | ||
| MarkupSafe==2.1.5 | ||
| matplotlib==3.8.3 | ||
| matplotlib==3.9.2 | ||
| mdurl==0.1.2 | ||
| ml-dtypes==0.3.2 | ||
| ml-dtypes==0.4.0 | ||
| ml_collections==0.1.1 | ||
| mpmath==1.3.0 | ||
| msgpack==1.0.8 | ||
| mudata==0.2.3 | ||
| mudata==0.3.1 | ||
| multidict==6.0.5 | ||
| multipledispatch==1.0.0 | ||
| namex==0.0.7 | ||
| namex==0.0.8 | ||
| natsort==8.4.0 | ||
| nest-asyncio==1.6.0 | ||
| networkx==3.2.1 | ||
| numba==0.59.1 | ||
| networkx==3.3 | ||
| numba==0.60.0 | ||
| numpy==1.26.4 | ||
| numpyro==0.14.0 | ||
| numpyro==0.15.2 | ||
| nvidia-cublas-cu12==12.1.3.1 | ||
| nvidia-cuda-cupti-cu12==12.1.105 | ||
| nvidia-cuda-nvrtc-cu12==12.1.105 | ||
| nvidia-cuda-runtime-cu12==12.1.105 | ||
| nvidia-cudnn-cu12==8.9.2.26 | ||
| nvidia-cudnn-cu12==9.1.0.70 | ||
| nvidia-cufft-cu12==11.0.2.54 | ||
| nvidia-curand-cu12==10.3.2.106 | ||
| nvidia-cusolver-cu12==11.4.5.107 | ||
| nvidia-cusparse-cu12==12.1.0.106 | ||
| nvidia-nccl-cu12==2.19.3 | ||
| nvidia-nvjitlink-cu12==12.4.99 | ||
| nvidia-nccl-cu12==2.20.5 | ||
| nvidia-nvjitlink-cu12==12.6.68 | ||
| nvidia-nvtx-cu12==12.1.105 | ||
| obonet==1.0.0 | ||
| obonet==1.1.0 | ||
| OnClass==1.3 | ||
| openpyxl==3.1.2 | ||
| openpyxl==3.1.5 | ||
| opt-einsum==3.3.0 | ||
| optax==0.2.1 | ||
| optree==0.11.0 | ||
| orbax-checkpoint==0.5.7 | ||
| packaging==24.0 | ||
| optax==0.2.3 | ||
| optree==0.12.1 | ||
| orbax-checkpoint==0.6.1 | ||
| packaging==24.1 | ||
| pandas==1.5.3 | ||
| patsy==0.5.6 | ||
| pillow==10.2.0 | ||
| PopV==0.4.2 | ||
| protobuf==4.25.3 | ||
| psutil==5.9.8 | ||
| Pygments==2.17.2 | ||
| pynndescent==0.5.11 | ||
| pyparsing==3.1.2 | ||
| pillow==10.4.0 | ||
| PopV @ git+https://github.com/czbiohub/PopV@2d29c9a290d2015ec65ef0ef9f0e6b6d2277e7bb | ||
| protobuf==4.25.4 | ||
| psutil==6.0.0 | ||
| Pygments==2.18.0 | ||
| pynndescent==0.5.13 | ||
| pyparsing==3.1.4 | ||
| pyro-api==0.1.2 | ||
| pyro-ppl==1.9.0 | ||
| pyro-ppl==1.9.1 | ||
| PySocks==1.7.1 | ||
| python-dateutil==2.9.0.post0 | ||
| pytorch-lightning==2.2.1 | ||
| pytorch-lightning==2.4.0 | ||
| pytz==2024.1 | ||
| PyYAML==6.0.1 | ||
| regex==2023.12.25 | ||
| requests==2.31.0 | ||
| rich==13.7.1 | ||
| safetensors==0.4.2 | ||
| PyYAML==6.0.2 | ||
| regex==2024.7.24 | ||
| requests==2.32.3 | ||
| rich==13.8.0 | ||
| safetensors==0.4.5 | ||
| scanorama==1.7.4 | ||
| scanpy==1.10.0 | ||
| scanpy==1.10.2 | ||
| scikit-learn==1.1.3 | ||
| scikit-misc==0.3.1 | ||
| scipy==1.12.0 | ||
| scvi-tools==1.1.2 | ||
| scikit-misc==0.5.1 | ||
| scipy==1.14.1 | ||
| scvi-tools==1.1.6 | ||
| seaborn==0.13.2 | ||
| sentence-transformers==2.6.1 | ||
| sentence-transformers==3.0.1 | ||
| session_info==1.0.0 | ||
| six==1.16.0 | ||
| sortedcontainers==2.4.0 | ||
| soupsieve==2.5 | ||
| statsmodels==0.14.1 | ||
| soupsieve==2.6 | ||
| statsmodels==0.14.2 | ||
| stdlib-list==0.10.0 | ||
| sympy==1.12 | ||
| tensorboard==2.16.2 | ||
| sympy==1.13.2 | ||
| tensorboard==2.17.1 | ||
| tensorboard-data-server==0.7.2 | ||
| tensorflow==2.16.1 | ||
| tensorflow-io-gcs-filesystem==0.36.0 | ||
| tensorstore==0.1.56 | ||
| tensorflow==2.17.0 | ||
| tensorflow-io-gcs-filesystem==0.37.1 | ||
| tensorstore==0.1.65 | ||
| termcolor==2.4.0 | ||
| texttable==1.7.0 | ||
| threadpoolctl==3.4.0 | ||
| tokenizers==0.15.2 | ||
| threadpoolctl==3.5.0 | ||
| tokenizers==0.19.1 | ||
| toolz==0.12.1 | ||
| torch==2.2.1 | ||
| torchmetrics==1.3.2 | ||
| tqdm==4.66.2 | ||
| transformers==4.39.1 | ||
| triton==2.2.0 | ||
| typing_extensions==4.10.0 | ||
| umap-learn==0.5.5 | ||
| urllib3==2.2.1 | ||
| Werkzeug==3.0.1 | ||
| torch==2.4.1 | ||
| torchmetrics==1.4.1 | ||
| tqdm==4.66.5 | ||
| transformers==4.44.2 | ||
| triton==3.0.0 | ||
| typing_extensions==4.12.2 | ||
| umap-learn==0.5.6 | ||
| urllib3==2.2.2 | ||
| Werkzeug==3.0.4 | ||
| wget==3.2 | ||
| wrapt==1.16.0 | ||
| yarl==1.9.4 | ||
| yarl==1.9.11 | ||
| zenodo-get==1.5.1 | ||
| zipp==3.18.1 | ||
| zipp==3.20.1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,2 +1,3 @@ | ||
| popv==0.4.* | ||
| # Using latest popv as of 9/6/2024 | ||
| popv @ git+https://github.com/czbiohub/PopV@2d29c9a | ||
| zenodo_get==1.5.* |