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Merge pull request #869 from hubmapconsortium/sfd5311/visium-visualiz…
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…ation-updates

Bump salmon-rnaseq to v2.2.2
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@jpuerto-psc
jpuerto-psc authored May 7, 2024
2 parents ce65de6 + b8d43d4 commit 6ea1d16
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/ingest-pipeline/airflow/dags/cwl/salmon-rnaseq
Submodule salmon-rnaseq updated 14 files
+3 −1 bin/analysis/add_spatial_coordinates.py
+22 −3 bin/analysis/read_visium_positions.py
+1 −1 steps/bulk-salmon.cwl
+1 −1 steps/compute-qc-metrics.cwl
+1 −1 steps/expression-matrix.cwl
+1 −1 steps/fastqc.cwl
+1 −1 steps/salmon-quantification/adjust-barcodes.cwl
+1 −1 steps/salmon-quantification/alevin-to-anndata.cwl
+1 −1 steps/salmon-quantification/annotate-cells.cwl
+1 −1 steps/salmon-quantification/salmon.cwl
+1 −1 steps/salmon-quantification/trim-reads.cwl
+1 −1 steps/scanpy-analysis.cwl
+1 −1 steps/scvelo-analysis.cwl
+1 −1 steps/squidpy-analysis.cwl

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