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Merge pull request #871 from hubmapconsortium/sfd5311/visium-visualiz…
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…ation-updates

Bumping salmon-rnaseq to v2.2.3
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@jpuerto-psc
jpuerto-psc authored May 8, 2024
2 parents a6461dd + cd46252 commit cbe9969
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/ingest-pipeline/airflow/dags/cwl/salmon-rnaseq
Submodule salmon-rnaseq updated 13 files
+13 −8 bin/analysis/read_visium_positions.py
+1 −1 steps/bulk-salmon.cwl
+1 −1 steps/compute-qc-metrics.cwl
+1 −1 steps/expression-matrix.cwl
+1 −1 steps/fastqc.cwl
+1 −1 steps/salmon-quantification/adjust-barcodes.cwl
+1 −1 steps/salmon-quantification/alevin-to-anndata.cwl
+1 −1 steps/salmon-quantification/annotate-cells.cwl
+1 −1 steps/salmon-quantification/salmon.cwl
+1 −1 steps/salmon-quantification/trim-reads.cwl
+1 −1 steps/scanpy-analysis.cwl
+1 −1 steps/scvelo-analysis.cwl
+1 −1 steps/squidpy-analysis.cwl

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