v1.6.5

• De-specify CWLTOOL path to avoid Bridges2 problems
• bump ingest-validation-tools to d9a1b30
• Tweak codex_cytokit to do offset calc on pyramids

v1.6.4

codex-pipeline v2.0
salmon-rnaseq v2.0.7
sprm v1.0.3.6
ingest-validation-tools v0.0.11-36-g4ef4f90

v1.6.3

Updates to linked versions of submodules:

• codex-pipeline -> v2.0b8
• sprm -> v1.0.3.2
• ingest-validaton-tools -> v0.0.11-26-g8505e86
• ingest-validation-tests to latest.

v1.6.2

bump codex-pipeline to v2.0b7, bump ingest-validation-tools to caa6dd2 (v0.0.11-25-gcaa6dd2)

v1.6.1b

Hotfix to add 3D Imaging Mass Spectroscopy and Light Sheet to the workflow map. Otherwise identical to v1.6.0.

v1.6.0

Bump ingest-validation-tools to 567560 (v0.0.10-8-g5675603)

v1.5.5

• Fix to sc_atac_seq workflows
• bump codex-pipeline
• bump salmon-rnaseq
• bump ingest-validation-tools
• CODEX: fix ome-tiff-offsets invocation with stitched images
• bump portal-containers

v1.5.4

Fix a bug in sc_atac_seq workflows that was accidentally included in v1.5.3

v1.5.3

Updates to submodules relative to v1.5.2, plus some improved utility scripts.

v1.5.2

Updates to some submodules relative to v1.5.1, providing workflow and portal support for single cell RNAseq.