v2.0.8

• Bump portal-containers
• Trigger file reindex DAG
• Bugfix Launch multi analysis DAG

v2.0.7

• Bump ingest-validation-tools to c518dd5
• Bugfix Airflow DAG max active runs not respected

v2.0.5

• Bump ingest-validation-tools to [3dde26f]

v2.0.4

• Bump sc-atac-seq-pipeline submodule to v2.0.2
• Update portal-containers
• Add an auto-deployment script to be used to sync changes to files/environment from VMs

v2.0.3

• Updated scripts to make use of conda environment
• Bump codex-pipeline submodule to v2.4.3
• Handle 10X multiome ATAC-seq datasets

v2.0.2

Bump ingest-validation-tools -> 2c3c57
Bump salmon-rnaseq submodule to v2.1.11
Updated system/config scripts for Airflow 2

v2.0.1

Bump ingest-validation-tools -> 2c3c57
Bump salmon-rnaseq submodule to v2.1.11
Updated system/config scripts for Airflow 2

v2.0.0

• Change to Airflow 2.2.5, with associated changes in everything else
• modify new_dataset_survey.py to directly update the Google sheet
• limit java thread spawning in docker containers invoked from CWL
• add a DAG to do diagnostics of failed runs, including:
  • scan for certain keywords indicating errors in the session.log of the failed run
  • run inexpensive validation plugin tests against the parents used in the failed run
• remove old auth globus plugin
• add support for launching ingestion of new datasets from the launch_multi_analysis DAG
• add script to regenerate conda environments
• fix URL parsing for search-api v3
• additional airflow_wrapper configs
• bump codex-pipeline -> 0514dc6953 (v2.4.2)
• bump py-hubmapbags -> 09665dde
• bump ingest-validation-tools -> 794967cc
• bump ingest-validation-tests -> d0c6590c
• bump manual-data-ingest -> 478d29906

v1.9.6

This release is identical to Release 2.0.0 . Please use that release.

• Change to Airflow 2.2.5, with associated changes in everything else
• modify new_dataset_survey.py to directly update the Google sheet
• limit java thread spawning in docker containers invoked from CWL
• add a DAG to do diagnostics of failed runs, including:
  • scan for certain keywords indicating errors in the session.log of the failed run
  • run inexpensive validation plugin tests against the parents used in the failed run
• remove old auth globus plugin
• add support for launching ingestion of new datasets from the launch_multi_analysis DAG
• add script to regenerate conda environments
• fix URL parsing for search-api v3
• additional airflow_wrapper configs
• bump codex-pipeline -> 0514dc6953 (v2.4.2)
• bump py-hubmapbags -> 09665dde
• bump ingest-validation-tools -> 794967cc
• bump ingest-validation-tests -> d0c6590c
• bump manual-data-ingest -> 478d29906

v1.9.5.2

Small bugfix on search api new v3 url, to be correctly parsed inside the pipelines