Merge pull request #59 from hubmapconsortium/phillips/fastq_bugfix

fixing error caused by records_read failure

src/ingest_validation_tests/fastq_validator_logic.py

@@ -170,18 +170,22 @@ def validate_fastq_file(self, fastq_file: Path) -> None:
             return
         except EOFError:
             self.errors.append(self._format_error(f"EOF in FASTQ data file {fastq_file}."))
+            return
         except Exception as e:
             self.errors.append(
                 self._format_error(f"Unexpected error: {e} on data file {fastq_file}.")
             )
+            return
         self._file_record_counts[str(fastq_file)] = records_read
 
     def validate_fastq_files_in_path(self, paths: List[Path], threads: int) -> None:
         data_found_one = []
         dirs_and_files = defaultdict(dict)
         for path in paths:
             dirs_and_files[path] = fastq_utils.collect_fastq_files_by_directory(path)
-            _log(f"Added files from {path} to dirs_and_files: {dirs_and_files}")
+            _log(
+                f"FASTQValidatorLogic: Added files from {path} to dirs_and_files: {dirs_and_files}"
+            )
         file_list = []
         with Manager() as manager:
             # TODO: re-evaluate dicts/for loops